miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 62429 0.7 0.547407
Target:  5'- cCCCaaUCUCcucGUCUGaGcCCGCCGCGCg -3'
miRNA:   3'- aGGG--AGAGcu-CAGACcC-GGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 59341 0.7 0.556676
Target:  5'- gUCCUUCacCGAGcugggaUGGGCCGuCUGCGCc -3'
miRNA:   3'- -AGGGAGa-GCUCag----ACCCGGC-GGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 103880 0.69 0.575342
Target:  5'- gCCgaCagGGGgaUGGGCUGCCGCGCg -3'
miRNA:   3'- aGGgaGagCUCagACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 175099 0.69 0.575342
Target:  5'- cCCUUUUUGccGGcCaGGGCCGCCGCGg -3'
miRNA:   3'- aGGGAGAGC--UCaGaCCCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 197372 0.69 0.584729
Target:  5'- gCCCgCUgugaGAGUUccaGGGCCGCCGcCGCc -3'
miRNA:   3'- aGGGaGAg---CUCAGa--CCCGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 129643 0.69 0.584729
Target:  5'- aCCgUCcgCGGcgccGUCgccgGGGCgGCCGCGCu -3'
miRNA:   3'- aGGgAGa-GCU----CAGa---CCCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 208585 0.69 0.593204
Target:  5'- gCCUgacgCUCGAgugggaccuggccGUCUGGGCCGCguUGCGa -3'
miRNA:   3'- aGGGa---GAGCU-------------CAGACCCGGCG--GCGCg -5'
14619 5' -62.2 NC_003521.1 + 114924 0.69 0.594146
Target:  5'- gUCCCUCgagCGGcugCUGGagaGCUGCuCGCGCa -3'
miRNA:   3'- -AGGGAGa--GCUca-GACC---CGGCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 118186 0.69 0.603587
Target:  5'- gCCCgC-CGgcaaAGUCgGGGCCGCCgaGCGCg -3'
miRNA:   3'- aGGGaGaGC----UCAGaCCCGGCGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 124430 0.69 0.603587
Target:  5'- cUCCUCguccggCGAGacguggUUGGGCCGCgGCGg -3'
miRNA:   3'- aGGGAGa-----GCUCa-----GACCCGGCGgCGCg -5'
14619 5' -62.2 NC_003521.1 + 143436 0.69 0.603587
Target:  5'- cUCCUUCggCGAgGUCUGGccgcucgaCCGCCaGCGCg -3'
miRNA:   3'- -AGGGAGa-GCU-CAGACCc-------GGCGG-CGCG- -5'
14619 5' -62.2 NC_003521.1 + 156044 0.69 0.612099
Target:  5'- cUCCCUCugcuUCGGcggugccaacaacGUCgccGCCGCCGCGCc -3'
miRNA:   3'- -AGGGAG----AGCU-------------CAGaccCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 169406 0.69 0.613046
Target:  5'- gUCCuCUgUCaGGUUcgGGGCCGCCGCcucGCu -3'
miRNA:   3'- -AGG-GAgAGcUCAGa-CCCGGCGGCG---CG- -5'
14619 5' -62.2 NC_003521.1 + 163400 0.69 0.613046
Target:  5'- aUCCUCUCGGccguggccccGUCgucGGCUGCCGCuGCc -3'
miRNA:   3'- aGGGAGAGCU----------CAGac-CCGGCGGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 102857 0.68 0.622517
Target:  5'- gCCCguggCGuaGGUCUGGGCCG-UGCGUa -3'
miRNA:   3'- aGGGaga-GC--UCAGACCCGGCgGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 142985 0.68 0.622517
Target:  5'- cCCCUCUCu-GUCgcaccGGCgGUCGCGCc -3'
miRNA:   3'- aGGGAGAGcuCAGac---CCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 120837 0.68 0.640525
Target:  5'- aUCCUcCUCGGGUgccaugCUGgacucggccuugaGGCgGCCGCGCg -3'
miRNA:   3'- -AGGGaGAGCUCA------GAC-------------CCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 196452 0.68 0.650944
Target:  5'- -aCCUCggccUCGGGcgUGGGCCGCagccccaGCGCg -3'
miRNA:   3'- agGGAG----AGCUCagACCCGGCGg------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 114488 0.68 0.660402
Target:  5'- gCCUUCaUCuGGGUgCUGuccgucguGGCCGCCGUGCc -3'
miRNA:   3'- aGGGAG-AG-CUCA-GAC--------CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 133477 0.68 0.660402
Target:  5'- gCCCgaggUCGAGgaucacCUGGcGCCGCUGCuGCg -3'
miRNA:   3'- aGGGag--AGCUCa-----GACC-CGGCGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.