miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 223452 1.1 0.001263
Target:  5'- gUCCCUCUCGAGUCUGGGCCGCCGCGCc -3'
miRNA:   3'- -AGGGAGAGCUCAGACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 149529 0.76 0.240923
Target:  5'- -aCCUCuUCGAGUC-GGGCgGCgCGCGCu -3'
miRNA:   3'- agGGAG-AGCUCAGaCCCGgCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 151096 0.76 0.251907
Target:  5'- aCCC-CUCGGGUC-GGGCCGCUGgGg -3'
miRNA:   3'- aGGGaGAGCUCAGaCCCGGCGGCgCg -5'
14619 5' -62.2 NC_003521.1 + 146398 0.75 0.293613
Target:  5'- cCCCUgagaGAcGUCaUGGGCCGCCGCGUc -3'
miRNA:   3'- aGGGAgag-CU-CAG-ACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 130281 0.75 0.293613
Target:  5'- gCCCUCUCcGGcuacCUGGGCgaggccgcggCGCCGCGCa -3'
miRNA:   3'- aGGGAGAGcUCa---GACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 126385 0.74 0.350519
Target:  5'- gUUCUCgCGGGUCUGGuGCCGCCacaggucucggcccuGCGCg -3'
miRNA:   3'- aGGGAGaGCUCAGACC-CGGCGG---------------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 208165 0.72 0.432844
Target:  5'- cUCCUUgCUCGAcuuuccgccgucGUCUGcGCCGCCGCGa -3'
miRNA:   3'- -AGGGA-GAGCU------------CAGACcCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 53539 0.72 0.449601
Target:  5'- gUCCgCUC-CGGGUCgaGGuGCCGCUGuCGCg -3'
miRNA:   3'- -AGG-GAGaGCUCAGa-CC-CGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 142272 0.71 0.466709
Target:  5'- aCUCgggCUCGGG-CUGGGacCCGCCGcCGCu -3'
miRNA:   3'- aGGGa--GAGCUCaGACCC--GGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 187456 0.71 0.475388
Target:  5'- cUCCUgCUCG-GUCUGucggccccuccGCCGCCGCGCc -3'
miRNA:   3'- -AGGGaGAGCuCAGACc----------CGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 75964 0.71 0.483268
Target:  5'- aCCUUCUCGucgaggaggaagaAGUCUGGcGCCGgCCGC-Cg -3'
miRNA:   3'- aGGGAGAGC-------------UCAGACC-CGGC-GGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 196434 0.71 0.492983
Target:  5'- gCUgUCgccCGGGUCggccGGCUGCCGCGCg -3'
miRNA:   3'- aGGgAGa--GCUCAGac--CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 184351 0.71 0.492983
Target:  5'- -gCCUCuUCGGG-C-GGGCCGUgGCGCg -3'
miRNA:   3'- agGGAG-AGCUCaGaCCCGGCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 124235 0.71 0.501892
Target:  5'- gCCCgauUC-CGaAGggUUGGGUCGCCGCGCg -3'
miRNA:   3'- aGGG---AGaGC-UCa-GACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 119160 0.71 0.501892
Target:  5'- gCCCUC-CGAGgaaacaGGCCGgCGCGCa -3'
miRNA:   3'- aGGGAGaGCUCagac--CCGGCgGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 104148 0.71 0.501892
Target:  5'- gCCCUgCUCGGuGcUCUGcGGCgGCgGCGCg -3'
miRNA:   3'- aGGGA-GAGCU-C-AGAC-CCGgCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 149025 0.71 0.503682
Target:  5'- aCCCcagcggcguggagauUCUCGAGgccgugcccgcgCUGGGCUucgacgcgGCCGCGCu -3'
miRNA:   3'- aGGG---------------AGAGCUCa-----------GACCCGG--------CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 92179 0.7 0.523551
Target:  5'- aUCCCcgC-CGAGcUCgGGGCCguuuuucgccgcccgGCCGCGCg -3'
miRNA:   3'- -AGGGa-GaGCUC-AGaCCCGG---------------CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 91996 0.7 0.538188
Target:  5'- -aCCUCggcCGAGggcagGcGGUCGCCGCGCa -3'
miRNA:   3'- agGGAGa--GCUCaga--C-CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 172855 0.7 0.538188
Target:  5'- cUCgCUCUCgGAGUCUGaGGCCgaGCUGCa- -3'
miRNA:   3'- -AGgGAGAG-CUCAGAC-CCGG--CGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.