miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 120837 0.68 0.640525
Target:  5'- aUCCUcCUCGGGUgccaugCUGgacucggccuugaGGCgGCCGCGCg -3'
miRNA:   3'- -AGGGaGAGCUCA------GAC-------------CCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 103880 0.69 0.575342
Target:  5'- gCCgaCagGGGgaUGGGCUGCCGCGCg -3'
miRNA:   3'- aGGgaGagCUCagACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 114924 0.69 0.594146
Target:  5'- gUCCCUCgagCGGcugCUGGagaGCUGCuCGCGCa -3'
miRNA:   3'- -AGGGAGa--GCUca-GACC---CGGCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 118186 0.69 0.603587
Target:  5'- gCCCgC-CGgcaaAGUCgGGGCCGCCgaGCGCg -3'
miRNA:   3'- aGGGaGaGC----UCAGaCCCGGCGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 124430 0.69 0.603587
Target:  5'- cUCCUCguccggCGAGacguggUUGGGCCGCgGCGg -3'
miRNA:   3'- aGGGAGa-----GCUCa-----GACCCGGCGgCGCg -5'
14619 5' -62.2 NC_003521.1 + 143436 0.69 0.603587
Target:  5'- cUCCUUCggCGAgGUCUGGccgcucgaCCGCCaGCGCg -3'
miRNA:   3'- -AGGGAGa-GCU-CAGACCc-------GGCGG-CGCG- -5'
14619 5' -62.2 NC_003521.1 + 156044 0.69 0.612099
Target:  5'- cUCCCUCugcuUCGGcggugccaacaacGUCgccGCCGCCGCGCc -3'
miRNA:   3'- -AGGGAG----AGCU-------------CAGaccCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 102857 0.68 0.622517
Target:  5'- gCCCguggCGuaGGUCUGGGCCG-UGCGUa -3'
miRNA:   3'- aGGGaga-GC--UCAGACCCGGCgGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 142985 0.68 0.622517
Target:  5'- cCCCUCUCu-GUCgcaccGGCgGUCGCGCc -3'
miRNA:   3'- aGGGAGAGcuCAGac---CCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 172855 0.7 0.538188
Target:  5'- cUCgCUCUCgGAGUCUGaGGCCgaGCUGCa- -3'
miRNA:   3'- -AGgGAGAG-CUCAGAC-CCGG--CGGCGcg -5'
14619 5' -62.2 NC_003521.1 + 149025 0.71 0.503682
Target:  5'- aCCCcagcggcguggagauUCUCGAGgccgugcccgcgCUGGGCUucgacgcgGCCGCGCu -3'
miRNA:   3'- aGGG---------------AGAGCUCa-----------GACCCGG--------CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 124235 0.71 0.501892
Target:  5'- gCCCgauUC-CGaAGggUUGGGUCGCCGCGCg -3'
miRNA:   3'- aGGG---AGaGC-UCa-GACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 149529 0.76 0.240923
Target:  5'- -aCCUCuUCGAGUC-GGGCgGCgCGCGCu -3'
miRNA:   3'- agGGAG-AGCUCAGaCCCGgCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 130281 0.75 0.293613
Target:  5'- gCCCUCUCcGGcuacCUGGGCgaggccgcggCGCCGCGCa -3'
miRNA:   3'- aGGGAGAGcUCa---GACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 146398 0.75 0.293613
Target:  5'- cCCCUgagaGAcGUCaUGGGCCGCCGCGUc -3'
miRNA:   3'- aGGGAgag-CU-CAG-ACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 53539 0.72 0.449601
Target:  5'- gUCCgCUC-CGGGUCgaGGuGCCGCUGuCGCg -3'
miRNA:   3'- -AGG-GAGaGCUCAGa-CC-CGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 142272 0.71 0.466709
Target:  5'- aCUCgggCUCGGG-CUGGGacCCGCCGcCGCu -3'
miRNA:   3'- aGGGa--GAGCUCaGACCC--GGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 187456 0.71 0.475388
Target:  5'- cUCCUgCUCG-GUCUGucggccccuccGCCGCCGCGCc -3'
miRNA:   3'- -AGGGaGAGCuCAGACc----------CGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 196434 0.71 0.492983
Target:  5'- gCUgUCgccCGGGUCggccGGCUGCCGCGCg -3'
miRNA:   3'- aGGgAGa--GCUCAGac--CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 119160 0.71 0.501892
Target:  5'- gCCCUC-CGAGgaaacaGGCCGgCGCGCa -3'
miRNA:   3'- aGGGAGaGCUCagac--CCGGCgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.