miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 151096 0.76 0.251907
Target:  5'- aCCC-CUCGGGUC-GGGCCGCUGgGg -3'
miRNA:   3'- aGGGaGAGCUCAGaCCCGGCGGCgCg -5'
14619 5' -62.2 NC_003521.1 + 77955 0.68 0.660402
Target:  5'- gCCCUgcUGGGUCuUGGaGCCGgCCGCGg -3'
miRNA:   3'- aGGGAgaGCUCAG-ACC-CGGC-GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 131310 0.68 0.679254
Target:  5'- gCCCUgCUCGAG-CaGcGGCCGgCGCGa -3'
miRNA:   3'- aGGGA-GAGCUCaGaC-CCGGCgGCGCg -5'
14619 5' -62.2 NC_003521.1 + 223716 0.66 0.788408
Target:  5'- -aCCUCgccggguacgacggCGGGUCcgguggcgggaacgUGGGUCGCCGCcaGCg -3'
miRNA:   3'- agGGAGa-------------GCUCAG--------------ACCCGGCGGCG--CG- -5'
14619 5' -62.2 NC_003521.1 + 184351 0.71 0.492983
Target:  5'- -gCCUCuUCGGG-C-GGGCCGUgGCGCg -3'
miRNA:   3'- agGGAG-AGCUCaGaCCCGGCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 104148 0.71 0.501892
Target:  5'- gCCCUgCUCGGuGcUCUGcGGCgGCgGCGCg -3'
miRNA:   3'- aGGGA-GAGCU-C-AGAC-CCGgCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 91996 0.7 0.538188
Target:  5'- -aCCUCggcCGAGggcagGcGGUCGCCGCGCa -3'
miRNA:   3'- agGGAGa--GCUCaga--C-CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 62429 0.7 0.547407
Target:  5'- cCCCaaUCUCcucGUCUGaGcCCGCCGCGCg -3'
miRNA:   3'- aGGG--AGAGcu-CAGACcC-GGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 197372 0.69 0.584729
Target:  5'- gCCCgCUgugaGAGUUccaGGGCCGCCGcCGCc -3'
miRNA:   3'- aGGGaGAg---CUCAGa--CCCGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 196452 0.68 0.650944
Target:  5'- -aCCUCggccUCGGGcgUGGGCCGCagccccaGCGCg -3'
miRNA:   3'- agGGAG----AGCUCagACCCGGCGg------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 208585 0.69 0.593204
Target:  5'- gCCUgacgCUCGAgugggaccuggccGUCUGGGCCGCguUGCGa -3'
miRNA:   3'- aGGGa---GAGCU-------------CAGACCCGGCG--GCGCg -5'
14619 5' -62.2 NC_003521.1 + 175099 0.69 0.575342
Target:  5'- cCCUUUUUGccGGcCaGGGCCGCCGCGg -3'
miRNA:   3'- aGGGAGAGC--UCaGaCCCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 126385 0.74 0.350519
Target:  5'- gUUCUCgCGGGUCUGGuGCCGCCacaggucucggcccuGCGCg -3'
miRNA:   3'- aGGGAGaGCUCAGACC-CGGCGG---------------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 169406 0.69 0.613046
Target:  5'- gUCCuCUgUCaGGUUcgGGGCCGCCGCcucGCu -3'
miRNA:   3'- -AGG-GAgAGcUCAGa-CCCGGCGGCG---CG- -5'
14619 5' -62.2 NC_003521.1 + 208165 0.72 0.432844
Target:  5'- cUCCUUgCUCGAcuuuccgccgucGUCUGcGCCGCCGCGa -3'
miRNA:   3'- -AGGGA-GAGCU------------CAGACcCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 59341 0.7 0.556676
Target:  5'- gUCCUUCacCGAGcugggaUGGGCCGuCUGCGCc -3'
miRNA:   3'- -AGGGAGa-GCUCag----ACCCGGC-GGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 163400 0.69 0.613046
Target:  5'- aUCCUCUCGGccguggccccGUCgucGGCUGCCGCuGCc -3'
miRNA:   3'- aGGGAGAGCU----------CAGac-CCGGCGGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 111680 0.68 0.676433
Target:  5'- aUCCCcUUCGAG-CUGaGcGCCGCCugccugacguaccuGCGCg -3'
miRNA:   3'- -AGGGaGAGCUCaGAC-C-CGGCGG--------------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 75964 0.71 0.483268
Target:  5'- aCCUUCUCGucgaggaggaagaAGUCUGGcGCCGgCCGC-Cg -3'
miRNA:   3'- aGGGAGAGC-------------UCAGACC-CGGC-GGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 92179 0.7 0.523551
Target:  5'- aUCCCcgC-CGAGcUCgGGGCCguuuuucgccgcccgGCCGCGCg -3'
miRNA:   3'- -AGGGa-GaGCUC-AGaCCCGG---------------CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.