miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 86998 0.67 0.714659
Target:  5'- aUCCgUCagagcguggaaaCGGGcgugCUGGGCaCGCUGCGCg -3'
miRNA:   3'- -AGGgAGa-----------GCUCa---GACCCG-GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 137927 0.67 0.707265
Target:  5'- cUCCCUgUCGGGcgugCUGcGCCuCUGCGCc -3'
miRNA:   3'- -AGGGAgAGCUCa---GACcCGGcGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 129643 0.69 0.584729
Target:  5'- aCCgUCcgCGGcgccGUCgccgGGGCgGCCGCGCu -3'
miRNA:   3'- aGGgAGa-GCU----CAGa---CCCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 104148 0.71 0.501892
Target:  5'- gCCCUgCUCGGuGcUCUGcGGCgGCgGCGCg -3'
miRNA:   3'- aGGGA-GAGCU-C-AGAC-CCGgCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 221293 0.66 0.779022
Target:  5'- cCCCgaucCUCGGGUCcgaGGGCCaguagucCCGCGa -3'
miRNA:   3'- aGGGa---GAGCUCAGa--CCCGGc------GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 103495 0.66 0.75276
Target:  5'- gCCCg--CGuGauaggugaacUCgGGGUCGCCGCGCa -3'
miRNA:   3'- aGGGagaGCuC----------AGaCCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 131310 0.68 0.679254
Target:  5'- gCCCUgCUCGAG-CaGcGGCCGgCGCGa -3'
miRNA:   3'- aGGGA-GAGCUCaGaC-CCGGCgGCGCg -5'
14619 5' -62.2 NC_003521.1 + 184351 0.71 0.492983
Target:  5'- -gCCUCuUCGGG-C-GGGCCGUgGCGCg -3'
miRNA:   3'- agGGAG-AGCUCaGaCCCGGCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 44295 0.66 0.743814
Target:  5'- cCCCgggagCUgggCGGGUugCUGuGGCCGCUGCGg -3'
miRNA:   3'- aGGGa----GA---GCUCA--GAC-CCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 75964 0.71 0.483268
Target:  5'- aCCUUCUCGucgaggaggaagaAGUCUGGcGCCGgCCGC-Cg -3'
miRNA:   3'- aGGGAGAGC-------------UCAGACC-CGGC-GGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 26975 0.67 0.707265
Target:  5'- gCCCUgcagCGAGaCUGGGCCGaaCUGCuGCg -3'
miRNA:   3'- aGGGAga--GCUCaGACCCGGC--GGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 121874 0.67 0.734784
Target:  5'- aCUgUCUCGGGcgCUGGcccugacgggacGCCGCCGCcCa -3'
miRNA:   3'- aGGgAGAGCUCa-GACC------------CGGCGGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 196452 0.68 0.650944
Target:  5'- -aCCUCggccUCGGGcgUGGGCCGCagccccaGCGCg -3'
miRNA:   3'- agGGAG----AGCUCagACCCGGCGg------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 208585 0.69 0.593204
Target:  5'- gCCUgacgCUCGAgugggaccuggccGUCUGGGCCGCguUGCGa -3'
miRNA:   3'- aGGGa---GAGCU-------------CAGACCCGGCG--GCGCg -5'
14619 5' -62.2 NC_003521.1 + 59341 0.7 0.556676
Target:  5'- gUCCUUCacCGAGcugggaUGGGCCGuCUGCGCc -3'
miRNA:   3'- -AGGGAGa-GCUCag----ACCCGGC-GGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 92179 0.7 0.523551
Target:  5'- aUCCCcgC-CGAGcUCgGGGCCguuuuucgccgcccgGCCGCGCg -3'
miRNA:   3'- -AGGGa-GaGCUC-AGaCCCGG---------------CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 37323 0.66 0.78756
Target:  5'- cUCCUCU-GGGUggGGGCgGUCGCGg -3'
miRNA:   3'- aGGGAGAgCUCAgaCCCGgCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 7169 0.66 0.786712
Target:  5'- gCCCUCguaaUCGAG-CUccaguacGGcGCCGCCGCu- -3'
miRNA:   3'- aGGGAG----AGCUCaGA-------CC-CGGCGGCGcg -5'
14619 5' -62.2 NC_003521.1 + 211948 0.66 0.770371
Target:  5'- -aCCUCcgUGAGcUUGGGCgacucgaccgUGCCGCGCc -3'
miRNA:   3'- agGGAGa-GCUCaGACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 25616 0.66 0.761615
Target:  5'- aCCUUCacCGGG-CUGGcGCUGCUgGCGCg -3'
miRNA:   3'- aGGGAGa-GCUCaGACC-CGGCGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.