miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 7169 0.66 0.786712
Target:  5'- gCCCUCguaaUCGAG-CUccaguacGGcGCCGCCGCu- -3'
miRNA:   3'- aGGGAG----AGCUCaGA-------CC-CGGCGGCGcg -5'
14619 5' -62.2 NC_003521.1 + 12602 0.66 0.779022
Target:  5'- uUCCCUUcUGGGaUCgcuucgGGGCCGUggaaCGCGUg -3'
miRNA:   3'- -AGGGAGaGCUC-AGa-----CCCGGCG----GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 12754 0.66 0.78756
Target:  5'- -gCCUCggacgUGAG-CUGGGacCCGCgCGUGCg -3'
miRNA:   3'- agGGAGa----GCUCaGACCC--GGCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 13814 0.67 0.725677
Target:  5'- cCCCUC-CGuuUCcgGGGCCGUCGgaaaGCa -3'
miRNA:   3'- aGGGAGaGCucAGa-CCCGGCGGCg---CG- -5'
14619 5' -62.2 NC_003521.1 + 13961 0.66 0.78756
Target:  5'- gCCCUCgcugGAGcccugaUGGGCCuGCCcgGCGCg -3'
miRNA:   3'- aGGGAGag--CUCag----ACCCGG-CGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 19533 0.68 0.669841
Target:  5'- gCCCUCggaccCGAGgaUCgGGGUCuugGCCGCGUg -3'
miRNA:   3'- aGGGAGa----GCUC--AGaCCCGG---CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 19650 0.66 0.78756
Target:  5'- cUCCa--UCGuGUgcCUGgGGCUGCUGCGCu -3'
miRNA:   3'- -AGGgagAGCuCA--GAC-CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 25616 0.66 0.761615
Target:  5'- aCCUUCacCGGG-CUGGcGCUGCUgGCGCg -3'
miRNA:   3'- aGGGAGa-GCUCaGACC-CGGCGG-CGCG- -5'
14619 5' -62.2 NC_003521.1 + 26975 0.67 0.707265
Target:  5'- gCCCUgcagCGAGaCUGGGCCGaaCUGCuGCg -3'
miRNA:   3'- aGGGAga--GCUCaGACCCGGC--GGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 30841 0.66 0.779022
Target:  5'- aCgCUggUGGccGUCUGGGCCGuCCGCGg -3'
miRNA:   3'- aGgGAgaGCU--CAGACCCGGC-GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 35386 0.67 0.707265
Target:  5'- cCCCUCggCGAGgacgcGGGCCG-CGCGa -3'
miRNA:   3'- aGGGAGa-GCUCaga--CCCGGCgGCGCg -5'
14619 5' -62.2 NC_003521.1 + 37323 0.66 0.78756
Target:  5'- cUCCUCU-GGGUggGGGCgGUCGCGg -3'
miRNA:   3'- aGGGAGAgCUCAgaCCCGgCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 44295 0.66 0.743814
Target:  5'- cCCCgggagCUgggCGGGUugCUGuGGCCGCUGCGg -3'
miRNA:   3'- aGGGa----GA---GCUCA--GAC-CCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 53539 0.72 0.449601
Target:  5'- gUCCgCUC-CGGGUCgaGGuGCCGCUGuCGCg -3'
miRNA:   3'- -AGG-GAGaGCUCAGa-CC-CGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 53931 0.66 0.770371
Target:  5'- gUCCUcacgcaUCUgGAGacgcugagCUGGGCCgacgaGCCGUGCu -3'
miRNA:   3'- -AGGG------AGAgCUCa-------GACCCGG-----CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 54001 0.66 0.786712
Target:  5'- gCCCaUCUuguugcgCGAG-CUGGaaCCGCCGUGCu -3'
miRNA:   3'- aGGG-AGA-------GCUCaGACCc-GGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 59341 0.7 0.556676
Target:  5'- gUCCUUCacCGAGcugggaUGGGCCGuCUGCGCc -3'
miRNA:   3'- -AGGGAGa-GCUCag----ACCCGGC-GGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 62429 0.7 0.547407
Target:  5'- cCCCaaUCUCcucGUCUGaGcCCGCCGCGCg -3'
miRNA:   3'- aGGG--AGAGcu-CAGACcC-GGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 75964 0.71 0.483268
Target:  5'- aCCUUCUCGucgaggaggaagaAGUCUGGcGCCGgCCGC-Cg -3'
miRNA:   3'- aGGGAGAGC-------------UCAGACC-CGGC-GGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 77955 0.68 0.660402
Target:  5'- gCCCUgcUGGGUCuUGGaGCCGgCCGCGg -3'
miRNA:   3'- aGGGAgaGCUCAG-ACC-CGGC-GGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.