miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 226851 0.66 0.743814
Target:  5'- gUCCUCgUCGuAGUCacGGGCgcgguacuuguCGCCGUGCu -3'
miRNA:   3'- aGGGAG-AGC-UCAGa-CCCG-----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 223716 0.66 0.788408
Target:  5'- -aCCUCgccggguacgacggCGGGUCcgguggcgggaacgUGGGUCGCCGCcaGCg -3'
miRNA:   3'- agGGAGa-------------GCUCAG--------------ACCCGGCGGCG--CG- -5'
14619 5' -62.2 NC_003521.1 + 223452 1.1 0.001263
Target:  5'- gUCCCUCUCGAGUCUGGGCCGCCGCGCc -3'
miRNA:   3'- -AGGGAGAGCUCAGACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 221293 0.66 0.779022
Target:  5'- cCCCgaucCUCGGGUCcgaGGGCCaguagucCCGCGa -3'
miRNA:   3'- aGGGa---GAGCUCAGa--CCCGGc------GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 218665 0.66 0.770371
Target:  5'- gUCCCUCUCcaccGUCUcccgguaagaGGGCgGCgGCGa -3'
miRNA:   3'- -AGGGAGAGcu--CAGA----------CCCGgCGgCGCg -5'
14619 5' -62.2 NC_003521.1 + 212600 0.66 0.78756
Target:  5'- cUCCgUCagCGAGgggaagCUGGGCgGuuGCGa -3'
miRNA:   3'- -AGGgAGa-GCUCa-----GACCCGgCggCGCg -5'
14619 5' -62.2 NC_003521.1 + 211948 0.66 0.770371
Target:  5'- -aCCUCcgUGAGcUUGGGCgacucgaccgUGCCGCGCc -3'
miRNA:   3'- agGGAGa-GCUCaGACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 208585 0.69 0.593204
Target:  5'- gCCUgacgCUCGAgugggaccuggccGUCUGGGCCGCguUGCGa -3'
miRNA:   3'- aGGGa---GAGCU-------------CAGACCCGGCG--GCGCg -5'
14619 5' -62.2 NC_003521.1 + 208165 0.72 0.432844
Target:  5'- cUCCUUgCUCGAcuuuccgccgucGUCUGcGCCGCCGCGa -3'
miRNA:   3'- -AGGGA-GAGCU------------CAGACcCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 203594 0.66 0.78756
Target:  5'- cUCCUCUCcGGUCUccacccccGaGGCCGCCuaacCGCg -3'
miRNA:   3'- aGGGAGAGcUCAGA--------C-CCGGCGGc---GCG- -5'
14619 5' -62.2 NC_003521.1 + 197372 0.69 0.584729
Target:  5'- gCCCgCUgugaGAGUUccaGGGCCGCCGcCGCc -3'
miRNA:   3'- aGGGaGAg---CUCAGa--CCCGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 196452 0.68 0.650944
Target:  5'- -aCCUCggccUCGGGcgUGGGCCGCagccccaGCGCg -3'
miRNA:   3'- agGGAG----AGCUCagACCCGGCGg------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 196434 0.71 0.492983
Target:  5'- gCUgUCgccCGGGUCggccGGCUGCCGCGCg -3'
miRNA:   3'- aGGgAGa--GCUCAGac--CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 187456 0.71 0.475388
Target:  5'- cUCCUgCUCG-GUCUGucggccccuccGCCGCCGCGCc -3'
miRNA:   3'- -AGGGaGAGCuCAGACc----------CGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 184351 0.71 0.492983
Target:  5'- -gCCUCuUCGGG-C-GGGCCGUgGCGCg -3'
miRNA:   3'- agGGAG-AGCUCaGaCCCGGCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 175099 0.69 0.575342
Target:  5'- cCCUUUUUGccGGcCaGGGCCGCCGCGg -3'
miRNA:   3'- aGGGAGAGC--UCaGaCCCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 172991 0.66 0.782451
Target:  5'- gCCUUCU-GGGUCgcgGGGCUcacuugaggggagcaGCCGCGa -3'
miRNA:   3'- aGGGAGAgCUCAGa--CCCGG---------------CGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 172855 0.7 0.538188
Target:  5'- cUCgCUCUCgGAGUCUGaGGCCgaGCUGCa- -3'
miRNA:   3'- -AGgGAGAG-CUCAGAC-CCGG--CGGCGcg -5'
14619 5' -62.2 NC_003521.1 + 170942 0.66 0.743814
Target:  5'- gUUCUCUauGGcCUGGGCguggCGCUGCGCg -3'
miRNA:   3'- aGGGAGAgcUCaGACCCG----GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 169406 0.69 0.613046
Target:  5'- gUCCuCUgUCaGGUUcgGGGCCGCCGCcucGCu -3'
miRNA:   3'- -AGG-GAgAGcUCAGa-CCCGGCGGCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.