miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 116361 0.66 0.75276
Target:  5'- gCCCga-CGAGgccgagCUGcuGCUGCCGCGCg -3'
miRNA:   3'- aGGGagaGCUCa-----GACc-CGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 116748 0.66 0.75276
Target:  5'- gCCCUucaaacacguggCUUGuGcagCgUGGGCCGCCGcCGCg -3'
miRNA:   3'- aGGGA------------GAGCuCa--G-ACCCGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 112760 0.66 0.75276
Target:  5'- gCUCUC-CGA-UCUGGaGCCGCCauGUGCc -3'
miRNA:   3'- aGGGAGaGCUcAGACC-CGGCGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 103495 0.66 0.75276
Target:  5'- gCCCg--CGuGauaggugaacUCgGGGUCGCCGCGCa -3'
miRNA:   3'- aGGGagaGCuC----------AGaCCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 226851 0.66 0.743814
Target:  5'- gUCCUCgUCGuAGUCacGGGCgcgguacuuguCGCCGUGCu -3'
miRNA:   3'- aGGGAG-AGC-UCAGa-CCCG-----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 156613 0.66 0.743814
Target:  5'- -gCCUCUCGcGcCUGGuGCUGCgCGaCGCc -3'
miRNA:   3'- agGGAGAGCuCaGACC-CGGCG-GC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 44295 0.66 0.743814
Target:  5'- cCCCgggagCUgggCGGGUugCUGuGGCCGCUGCGg -3'
miRNA:   3'- aGGGa----GA---GCUCA--GAC-CCGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 170942 0.66 0.743814
Target:  5'- gUUCUCUauGGcCUGGGCguggCGCUGCGCg -3'
miRNA:   3'- aGGGAGAgcUCaGACCCG----GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 121874 0.67 0.734784
Target:  5'- aCUgUCUCGGGcgCUGGcccugacgggacGCCGCCGCcCa -3'
miRNA:   3'- aGGgAGAGCUCa-GACC------------CGGCGGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 116510 0.67 0.725677
Target:  5'- -gCCUCUUcuGcCUGGGUugcgucaccuCGCCGCGCu -3'
miRNA:   3'- agGGAGAGcuCaGACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 143168 0.67 0.725677
Target:  5'- aUCCCguggGGGUCggacccGGcGCCGCCGCGa -3'
miRNA:   3'- -AGGGagagCUCAGa-----CC-CGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 13814 0.67 0.725677
Target:  5'- cCCCUC-CGuuUCcgGGGCCGUCGgaaaGCa -3'
miRNA:   3'- aGGGAGaGCucAGa-CCCGGCGGCg---CG- -5'
14619 5' -62.2 NC_003521.1 + 86998 0.67 0.714659
Target:  5'- aUCCgUCagagcguggaaaCGGGcgugCUGGGCaCGCUGCGCg -3'
miRNA:   3'- -AGGgAGa-----------GCUCa---GACCCG-GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 137927 0.67 0.707265
Target:  5'- cUCCCUgUCGGGcgugCUGcGCCuCUGCGCc -3'
miRNA:   3'- -AGGGAgAGCUCa---GACcCGGcGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 26975 0.67 0.707265
Target:  5'- gCCCUgcagCGAGaCUGGGCCGaaCUGCuGCg -3'
miRNA:   3'- aGGGAga--GCUCaGACCCGGC--GGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 35386 0.67 0.707265
Target:  5'- cCCCUCggCGAGgacgcGGGCCG-CGCGa -3'
miRNA:   3'- aGGGAGa-GCUCaga--CCCGGCgGCGCg -5'
14619 5' -62.2 NC_003521.1 + 136758 0.67 0.707265
Target:  5'- gCCCgCUCGAG-CUGcuGGCCuacCUGCGCg -3'
miRNA:   3'- aGGGaGAGCUCaGAC--CCGGc--GGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 131310 0.68 0.679254
Target:  5'- gCCCUgCUCGAG-CaGcGGCCGgCGCGa -3'
miRNA:   3'- aGGGA-GAGCUCaGaC-CCGGCgGCGCg -5'
14619 5' -62.2 NC_003521.1 + 111680 0.68 0.676433
Target:  5'- aUCCCcUUCGAG-CUGaGcGCCGCCugccugacguaccuGCGCg -3'
miRNA:   3'- -AGGGaGAGCUCaGAC-C-CGGCGG--------------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 19533 0.68 0.669841
Target:  5'- gCCCUCggaccCGAGgaUCgGGGUCuugGCCGCGUg -3'
miRNA:   3'- aGGGAGa----GCUC--AGaCCCGG---CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.