miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 205004 0.7 0.478518
Target:  5'- cGGCGCGCaccgccagguucuCgcccacgCCGCCguagUCGGCCUUCGGGu -3'
miRNA:   3'- -CCGCGCG-------------Ga------GGUGG----AGCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 184369 0.7 0.479386
Target:  5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3'
miRNA:   3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 43245 0.7 0.496907
Target:  5'- gGGCGCGCUccaUCCGCCUCaucGCCaUCCu-- -3'
miRNA:   3'- -CCGCGCGG---AGGUGGAGc--CGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 204108 0.7 0.505775
Target:  5'- uGGCgccacuGCGCCUCCACCUgcucgGGCCaggcgCCGGa -3'
miRNA:   3'- -CCG------CGCGGAGGUGGAg----CCGGa----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 220184 0.7 0.505775
Target:  5'- aGGCGC-CCaCCAgCgcgCGGCuCUCCGAGc -3'
miRNA:   3'- -CCGCGcGGaGGUgGa--GCCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 81169 0.69 0.51471
Target:  5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3'
miRNA:   3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 200395 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 167 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 240716 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 123587 0.69 0.523708
Target:  5'- cGGCgGCGCCgggagCCGCCgCGGCCgucagCGGGu -3'
miRNA:   3'- -CCG-CGCGGa----GGUGGaGCCGGag---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 54060 0.69 0.532767
Target:  5'- cGC-CGCCUCCGCCgauGCCgCCGAGc -3'
miRNA:   3'- cCGcGCGGAGGUGGagcCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 44758 0.69 0.532767
Target:  5'- -uCGCGCCagUCCACCUcgcCGGCCUuCCGc- -3'
miRNA:   3'- ccGCGCGG--AGGUGGA---GCCGGA-GGCuc -5'
14620 5' -63.3 NC_003521.1 + 80908 0.69 0.532767
Target:  5'- cGGCgGCGCCUCCucuuCCUCGuuCgCCGAa -3'
miRNA:   3'- -CCG-CGCGGAGGu---GGAGCcgGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 142248 0.69 0.54188
Target:  5'- cGCGgGCCcgcUCCuCCUCGGCCgacUCGGGc -3'
miRNA:   3'- cCGCgCGG---AGGuGGAGCCGGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 192110 0.69 0.54188
Target:  5'- --gGCGUCUCCACCUCucccGGCCUCguCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG----CCGGAG--GCUc -5'
14620 5' -63.3 NC_003521.1 + 144471 0.69 0.54188
Target:  5'- cGGCGCGCCaCCACCauaaCCUgCGAGg -3'
miRNA:   3'- -CCGCGCGGaGGUGGagccGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181126 0.69 0.550126
Target:  5'- cGGCGCgGCaguugagguagggCUCCACCU-GGCgUCUGAGc -3'
miRNA:   3'- -CCGCG-CG-------------GAGGUGGAgCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 84694 0.69 0.551045
Target:  5'- uGCGUGCa--CACCUccaggcCGGCCUCCGGu -3'
miRNA:   3'- cCGCGCGgagGUGGA------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 52798 0.69 0.551045
Target:  5'- cGGUGCGgCUCCACCUgGaccGCCUUCa-- -3'
miRNA:   3'- -CCGCGCgGAGGUGGAgC---CGGAGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.