miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 155936 0.71 0.837831
Target:  5'- -gACGgccuacUCGCGCcaccCGGaCCGGGCGGCc -3'
miRNA:   3'- caUGUaa----AGCGUGa---GCC-GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 110676 0.71 0.821374
Target:  5'- -gGCGUa--GCGCUCGGU--GGCGGCa -3'
miRNA:   3'- caUGUAaagCGUGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 91982 0.73 0.710996
Target:  5'- gGUGCAcggcaCGCAcCUCGGCCgaGGGCaGGCg -3'
miRNA:   3'- -CAUGUaaa--GCGU-GAGCCGG--UCCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 180200 0.77 0.512793
Target:  5'- gGUACAgguacUCGCGCUCGGCguuGGUGGUg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAGCCGgu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 127652 0.69 0.882681
Target:  5'- -gGCAccUCGCGgcccauCUUGGCCgcgagcAGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGU------GAGCCGG------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 204881 0.7 0.86115
Target:  5'- -cGC-UUUCGCGaUUGGCCGcGCGGCg -3'
miRNA:   3'- caUGuAAAGCGUgAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 184020 0.71 0.804254
Target:  5'- -gACucgUUCGCGCgcgacgcCGGUUGGGCGGCc -3'
miRNA:   3'- caUGua-AAGCGUGa------GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197866 0.78 0.447881
Target:  5'- -gGCGggUCGCGCUCgcugGGCugCAGGCGGCa -3'
miRNA:   3'- caUGUaaAGCGUGAG----CCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 96637 0.7 0.86115
Target:  5'- uUGCcgUUCuccaGCGCgCGG-CAGGCGGCg -3'
miRNA:   3'- cAUGuaAAG----CGUGaGCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 37709 0.78 0.447881
Target:  5'- -cGCAgagUGCcUUUGGCCAGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGuGAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 177184 0.71 0.812036
Target:  5'- -cACGgggUUGCGCgugCGGuacuucuCCAGGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUGa--GCC-------GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 136622 0.7 0.845793
Target:  5'- cUGCAgca-GCACguaaUCGGCCacgggcgcgGGGCGGCg -3'
miRNA:   3'- cAUGUaaagCGUG----AGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167263 0.72 0.77747
Target:  5'- -aGCGcc-CGCACcaCGGCCAGGUGGUu -3'
miRNA:   3'- caUGUaaaGCGUGa-GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126407 0.73 0.710996
Target:  5'- -cACAggUCucggcccuGCGCgauggCGGCCAGGCGGUc -3'
miRNA:   3'- caUGUaaAG--------CGUGa----GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86162 0.74 0.661401
Target:  5'- -aGCGUcUCGCugccggcCUCGGCCA-GCGGCa -3'
miRNA:   3'- caUGUAaAGCGu------GAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 46398 0.75 0.601212
Target:  5'- gGUGCGUggggCGCGCg-GGCCAGgaaGCGGCg -3'
miRNA:   3'- -CAUGUAaa--GCGUGagCCGGUC---CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 44737 0.69 0.900418
Target:  5'- -cGCAUUUCGUGCUgcuggacgccgagaCGGaCCgcggaAGGCGGCc -3'
miRNA:   3'- caUGUAAAGCGUGA--------------GCC-GG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 74578 0.69 0.889436
Target:  5'- -aGCAcggCcCGCUC-GCCGGGCGGCa -3'
miRNA:   3'- caUGUaaaGcGUGAGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 174213 0.7 0.868533
Target:  5'- cGUugGggUCGCGCgggUCGGgCAGG-GGCg -3'
miRNA:   3'- -CAugUaaAGCGUG---AGCCgGUCCgCCG- -5'
14621 5' -54.9 NC_003521.1 + 163219 0.7 0.86634
Target:  5'- -cACGgg-CGCGCccggugacguggguUCGGCCAcGGCGGUc -3'
miRNA:   3'- caUGUaaaGCGUG--------------AGCCGGU-CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.