miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 118097 0.66 0.861618
Target:  5'- gCGgcGCcGUCGCCCAcgaccacgaccgccuCCAGCcCCGCc -3'
miRNA:   3'- -GCauCGcCAGCGGGU---------------GGUCGuGGUGc -5'
14623 5' -59.4 NC_003521.1 + 232375 0.66 0.872189
Target:  5'- gCGaAGCGGagGUCCACCGucucgcgcuggcuGCGCCuGCGg -3'
miRNA:   3'- -GCaUCGCCagCGGGUGGU-------------CGUGG-UGC- -5'
14623 5' -59.4 NC_003521.1 + 71290 0.66 0.885611
Target:  5'- ---cGCGGcacggGCCCcuggggcACCAGCACCugGg -3'
miRNA:   3'- gcauCGCCag---CGGG-------UGGUCGUGGugC- -5'
14623 5' -59.4 NC_003521.1 + 240464 0.66 0.886261
Target:  5'- --cAGCGGUCGCaggcgCCGCCuccGGCAgcUCACGc -3'
miRNA:   3'- gcaUCGCCAGCG-----GGUGG---UCGU--GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 57480 0.66 0.865897
Target:  5'- cCGUGGCaGUggcacuucuUGCCCAUgaCGGCGCgCACGg -3'
miRNA:   3'- -GCAUCGcCA---------GCGGGUG--GUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 178686 0.66 0.886261
Target:  5'- --gGGUGGUCGCggCCGCUcaGGUACCAgGu -3'
miRNA:   3'- gcaUCGCCAGCG--GGUGG--UCGUGGUgC- -5'
14623 5' -59.4 NC_003521.1 + 163352 0.66 0.858001
Target:  5'- uGUAGCGGUagcaGCggcggcggcagugUCACgGGCACCAaCGg -3'
miRNA:   3'- gCAUCGCCAg---CG-------------GGUGgUCGUGGU-GC- -5'
14623 5' -59.4 NC_003521.1 + 153716 0.66 0.865897
Target:  5'- ---cGCG--CGUCCACCAGCGgCACGa -3'
miRNA:   3'- gcauCGCcaGCGGGUGGUCGUgGUGC- -5'
14623 5' -59.4 NC_003521.1 + 74316 0.66 0.879668
Target:  5'- cCGUGcucuuCGGUCGCCUGCacccuCAGCACCugcACGa -3'
miRNA:   3'- -GCAUc----GCCAGCGGGUG-----GUCGUGG---UGC- -5'
14623 5' -59.4 NC_003521.1 + 51466 0.66 0.886261
Target:  5'- aGUAGCGGUCaucugcCCCGgCAGC-CCGa- -3'
miRNA:   3'- gCAUCGCCAGc-----GGGUgGUCGuGGUgc -5'
14623 5' -59.4 NC_003521.1 + 42964 0.66 0.879668
Target:  5'- --cAGCGaGcgCGaCCCGCCGGCGCCcaccgACGa -3'
miRNA:   3'- gcaUCGC-Ca-GC-GGGUGGUCGUGG-----UGC- -5'
14623 5' -59.4 NC_003521.1 + 6682 0.66 0.858728
Target:  5'- uCGUGcuGCaGGgccugCGCCCGCgAGCGCUGCu -3'
miRNA:   3'- -GCAU--CG-CCa----GCGGGUGgUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 33121 0.66 0.879668
Target:  5'- gCGUAGCGG--GCCUucuCCAGCACgC-CGa -3'
miRNA:   3'- -GCAUCGCCagCGGGu--GGUCGUG-GuGC- -5'
14623 5' -59.4 NC_003521.1 + 180905 0.66 0.886261
Target:  5'- --aGGUGGgaGCCCACCuuGUACUGCGg -3'
miRNA:   3'- gcaUCGCCagCGGGUGGu-CGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 120966 0.66 0.886261
Target:  5'- gCGgGGCGGUUugcgGUCCGCCAGCucguCCuCGu -3'
miRNA:   3'- -GCaUCGCCAG----CGGGUGGUCGu---GGuGC- -5'
14623 5' -59.4 NC_003521.1 + 63018 0.66 0.879668
Target:  5'- --cGGCGG-CGCCCACgAcGC-CCACc -3'
miRNA:   3'- gcaUCGCCaGCGGGUGgU-CGuGGUGc -5'
14623 5' -59.4 NC_003521.1 + 34846 0.66 0.885611
Target:  5'- gGUagGGCGaGUgagagcCGCCCACCacguagaAGCACUGCGa -3'
miRNA:   3'- gCA--UCGC-CA------GCGGGUGG-------UCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 148780 0.66 0.886261
Target:  5'- --cGGCGGUCGCgCCGa-GGaGCCGCGg -3'
miRNA:   3'- gcaUCGCCAGCG-GGUggUCgUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 197696 0.66 0.886909
Target:  5'- -cUAGuCGGgaagaacgcugucaaCGCCCACCAcCACCACa -3'
miRNA:   3'- gcAUC-GCCa--------------GCGGGUGGUcGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 154467 0.66 0.879668
Target:  5'- ---cGCuGUUGgUCACCGGCACCGCc -3'
miRNA:   3'- gcauCGcCAGCgGGUGGUCGUGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.