miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 31435 0.67 0.820258
Target:  5'- --aGGCGGaugaugCGCagCGCCAGCACgGCGu -3'
miRNA:   3'- gcaUCGCCa-----GCGg-GUGGUCGUGgUGC- -5'
14623 5' -59.4 NC_003521.1 + 31517 0.66 0.872879
Target:  5'- cCGUGGgcaagaGGaaguaaUCGUCCACCAGCGuCUGCGa -3'
miRNA:   3'- -GCAUCg-----CC------AGCGGGUGGUCGU-GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 31877 0.72 0.570242
Target:  5'- gCG-AGCGGUacCGCaCCGCCAG-GCCGCGg -3'
miRNA:   3'- -GCaUCGCCA--GCG-GGUGGUCgUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 33055 0.68 0.760218
Target:  5'- aCGUGGauGcCGCCCAgCGGguCCAUGa -3'
miRNA:   3'- -GCAUCgcCaGCGGGUgGUCguGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 33121 0.66 0.879668
Target:  5'- gCGUAGCGG--GCCUucuCCAGCACgC-CGa -3'
miRNA:   3'- -GCAUCGCCagCGGGu--GGUCGUG-GuGC- -5'
14623 5' -59.4 NC_003521.1 + 34846 0.66 0.885611
Target:  5'- gGUagGGCGaGUgagagcCGCCCACCacguagaAGCACUGCGa -3'
miRNA:   3'- gCA--UCGC-CA------GCGGGUGG-------UCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 36668 0.66 0.863766
Target:  5'- aCGUGGgGGUCucgGCCgAgcugaggccgggcuCCGGCGCCugGc -3'
miRNA:   3'- -GCAUCgCCAG---CGGgU--------------GGUCGUGGugC- -5'
14623 5' -59.4 NC_003521.1 + 37481 0.69 0.72352
Target:  5'- uGUGgacGCGGUCuGCCCcCCGGCGuuuucgggcCCGCGg -3'
miRNA:   3'- gCAU---CGCCAG-CGGGuGGUCGU---------GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 37572 0.68 0.795298
Target:  5'- --cGGCaGGUcCGCagCACCAGCAgCACGg -3'
miRNA:   3'- gcaUCG-CCA-GCGg-GUGGUCGUgGUGC- -5'
14623 5' -59.4 NC_003521.1 + 37651 0.67 0.836148
Target:  5'- -cUGGUGGUgGCauuCUGCCGGCACgACGg -3'
miRNA:   3'- gcAUCGCCAgCG---GGUGGUCGUGgUGC- -5'
14623 5' -59.4 NC_003521.1 + 38176 0.67 0.851376
Target:  5'- gCGUcccAGCGGggcCGCUC-CCAGUGCuCGCGg -3'
miRNA:   3'- -GCA---UCGCCa--GCGGGuGGUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 39897 0.66 0.865897
Target:  5'- gCGU-GCGGUCGUCCcgGCgGGCGCgaaaGCGc -3'
miRNA:   3'- -GCAuCGCCAGCGGG--UGgUCGUGg---UGC- -5'
14623 5' -59.4 NC_003521.1 + 40236 0.66 0.886261
Target:  5'- --cAGCGGUCGCaggcgCCGCCuccGGCAgcUCACGc -3'
miRNA:   3'- gcaUCGCCAGCG-----GGUGG---UCGU--GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 40482 0.66 0.872879
Target:  5'- uGUGuccGCGG-CGCgCCA-CGGCGCCGCa -3'
miRNA:   3'- gCAU---CGCCaGCG-GGUgGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 40804 0.66 0.865897
Target:  5'- cCGgcGCGGucagcuauUCGCCUcggggcgggGCCcGCGCCAUGg -3'
miRNA:   3'- -GCauCGCC--------AGCGGG---------UGGuCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 42014 0.69 0.70472
Target:  5'- --cGGCGGcaCGacagacgCCGCCGGCACCACGc -3'
miRNA:   3'- gcaUCGCCa-GCg------GGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 42964 0.66 0.879668
Target:  5'- --cAGCGaGcgCGaCCCGCCGGCGCCcaccgACGa -3'
miRNA:   3'- gcaUCGC-Ca-GC-GGGUGGUCGUGG-----UGC- -5'
14623 5' -59.4 NC_003521.1 + 43165 0.68 0.795298
Target:  5'- gGUGGCGcugcUGCCgCACgAGCGCCACc -3'
miRNA:   3'- gCAUCGCca--GCGG-GUGgUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 45418 0.68 0.786706
Target:  5'- gGUAGcCGGU-GCCCGCCGuCGgCGCGg -3'
miRNA:   3'- gCAUC-GCCAgCGGGUGGUcGUgGUGC- -5'
14623 5' -59.4 NC_003521.1 + 51466 0.66 0.886261
Target:  5'- aGUAGCGGUCaucugcCCCGgCAGC-CCGa- -3'
miRNA:   3'- gCAUCGCCAGc-----GGGUgGUCGuGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.