miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 4358 0.67 0.851376
Target:  5'- --cGGCGGuUCGCUCAUCgcGGC-CCGCGu -3'
miRNA:   3'- gcaUCGCC-AGCGGGUGG--UCGuGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 6682 0.66 0.858728
Target:  5'- uCGUGcuGCaGGgccugCGCCCGCgAGCGCUGCu -3'
miRNA:   3'- -GCAU--CG-CCa----GCGGGUGgUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 10433 0.67 0.851376
Target:  5'- gCGUgucGGCGGUUGUCCG-CGGCACgUGCGu -3'
miRNA:   3'- -GCA---UCGCCAGCGGGUgGUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 16214 0.69 0.70472
Target:  5'- gGUGGCGG-CGCCCugC--CGCCugGc -3'
miRNA:   3'- gCAUCGCCaGCGGGugGucGUGGugC- -5'
14623 5' -59.4 NC_003521.1 + 17014 0.67 0.819447
Target:  5'- gGUGGCGGcggcgcaggcccgUCGUCUGgCGGC-CCACGg -3'
miRNA:   3'- gCAUCGCC-------------AGCGGGUgGUCGuGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 17491 0.72 0.551263
Target:  5'- gGUAGCGG-CG-CCGCCGGuCACgGCGg -3'
miRNA:   3'- gCAUCGCCaGCgGGUGGUC-GUGgUGC- -5'
14623 5' -59.4 NC_003521.1 + 18263 0.67 0.836148
Target:  5'- gGUGGUGGggaccUGCCCgcgacgggaggGCCcGCACCGCa -3'
miRNA:   3'- gCAUCGCCa----GCGGG-----------UGGuCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 18923 0.66 0.872878
Target:  5'- gGUGGCGc-CGCgCGCCGGCAauCCGCc -3'
miRNA:   3'- gCAUCGCcaGCGgGUGGUCGU--GGUGc -5'
14623 5' -59.4 NC_003521.1 + 18981 0.68 0.769159
Target:  5'- gGUGGUGGaCGCCCA-CAGCgGCCAg- -3'
miRNA:   3'- gCAUCGCCaGCGGGUgGUCG-UGGUgc -5'
14623 5' -59.4 NC_003521.1 + 20286 0.7 0.647248
Target:  5'- aGU-GCGGUgGauCUCGCCGGCGCCAUGc -3'
miRNA:   3'- gCAuCGCCAgC--GGGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 22394 0.69 0.70472
Target:  5'- cCGUGGUGccgccgcuGUCGCUgGCCAuGCugCGCGg -3'
miRNA:   3'- -GCAUCGC--------CAGCGGgUGGU-CGugGUGC- -5'
14623 5' -59.4 NC_003521.1 + 22719 0.7 0.666524
Target:  5'- --cAGCGGgcucuaCGCCCucaucgucACCGGCGCCGCc -3'
miRNA:   3'- gcaUCGCCa-----GCGGG--------UGGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 23441 0.66 0.858728
Target:  5'- -cUGGCGGU-GCCCACgGuGUGCCugGc -3'
miRNA:   3'- gcAUCGCCAgCGGGUGgU-CGUGGugC- -5'
14623 5' -59.4 NC_003521.1 + 24203 0.67 0.836148
Target:  5'- --gGGCGGaacgUCGUCCAacagCAGCACCAgCGg -3'
miRNA:   3'- gcaUCGCC----AGCGGGUg---GUCGUGGU-GC- -5'
14623 5' -59.4 NC_003521.1 + 25311 0.69 0.74204
Target:  5'- aCGgGGCGGUCGUCUuccaggugGCCGGCACguUGu -3'
miRNA:   3'- -GCaUCGCCAGCGGG--------UGGUCGUGguGC- -5'
14623 5' -59.4 NC_003521.1 + 25368 0.66 0.886261
Target:  5'- uCGUGGCucccUCgGCCUggcGCCAGCACCcGCGg -3'
miRNA:   3'- -GCAUCGcc--AG-CGGG---UGGUCGUGG-UGC- -5'
14623 5' -59.4 NC_003521.1 + 25538 0.68 0.77799
Target:  5'- cCGcUGGCGGUgGCCUGCCucuGCAUCuCGc -3'
miRNA:   3'- -GC-AUCGCCAgCGGGUGGu--CGUGGuGC- -5'
14623 5' -59.4 NC_003521.1 + 27345 0.67 0.851376
Target:  5'- uGUGGaUGG-CGUgCACCGGCGCCGu- -3'
miRNA:   3'- gCAUC-GCCaGCGgGUGGUCGUGGUgc -5'
14623 5' -59.4 NC_003521.1 + 29098 0.67 0.836148
Target:  5'- gGUGGCGcacuuUCGCCgCACCAuccgcGCGCUGCGc -3'
miRNA:   3'- gCAUCGCc----AGCGG-GUGGU-----CGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 30795 0.7 0.674211
Target:  5'- gGgcGCGGUagcgcaccgaggGCCCGCCGGCGaaacCCGCGa -3'
miRNA:   3'- gCauCGCCAg-----------CGGGUGGUCGU----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.