miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 163786 0.72 0.560731
Target:  5'- gGUAGCGG-CGCcaccaCCGCCGGCcucaACCGCa -3'
miRNA:   3'- gCAUCGCCaGCG-----GGUGGUCG----UGGUGc -5'
14623 5' -59.4 NC_003521.1 + 56111 0.74 0.460026
Target:  5'- aGUAGC-GUCGCgUAuugcCCAGCACCACGu -3'
miRNA:   3'- gCAUCGcCAGCGgGU----GGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 113756 0.73 0.477676
Target:  5'- uCGU--CGGUgGCCCugcCCGGCACCGCGu -3'
miRNA:   3'- -GCAucGCCAgCGGGu--GGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 226442 0.73 0.499287
Target:  5'- cCGUAGCgcgccagcucguccaGGUUGUgggCCACCAGCACCAgGu -3'
miRNA:   3'- -GCAUCG---------------CCAGCG---GGUGGUCGUGGUgC- -5'
14623 5' -59.4 NC_003521.1 + 114510 0.72 0.532481
Target:  5'- uCGUGGCcGccgUGCCCACCGcCGCCACGg -3'
miRNA:   3'- -GCAUCGcCa--GCGGGUGGUcGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 17491 0.72 0.551263
Target:  5'- gGUAGCGG-CG-CCGCCGGuCACgGCGg -3'
miRNA:   3'- gCAUCGCCaGCgGGUGGUC-GUGgUGC- -5'
14623 5' -59.4 NC_003521.1 + 127010 0.72 0.551263
Target:  5'- aCGUGGCGGU-GCCCGacgaCGcCGCCGCGg -3'
miRNA:   3'- -GCAUCGCCAgCGGGUg---GUcGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 235003 0.72 0.551263
Target:  5'- gGUAGCGGUC-CCC-CUGGCcuCCGCGg -3'
miRNA:   3'- gCAUCGCCAGcGGGuGGUCGu-GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 129907 0.72 0.551263
Target:  5'- aCGgGGCGGcCGCgCGCCuGCugCGCGa -3'
miRNA:   3'- -GCaUCGCCaGCGgGUGGuCGugGUGC- -5'
14623 5' -59.4 NC_003521.1 + 224101 0.74 0.442728
Target:  5'- --cGGCGGUCGCCgaacuCGCCGcGCAUCACGc -3'
miRNA:   3'- gcaUCGCCAGCGG-----GUGGU-CGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 127857 0.74 0.442728
Target:  5'- cCGUcgGGCaGGUUGCCCACCAggauGCGCgGCGu -3'
miRNA:   3'- -GCA--UCG-CCAGCGGGUGGU----CGUGgUGC- -5'
14623 5' -59.4 NC_003521.1 + 134699 0.75 0.385233
Target:  5'- gGUGGCGGUaggUGCCCACgGcCGCCACGc -3'
miRNA:   3'- gCAUCGCCA---GCGGGUGgUcGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 223970 0.78 0.28597
Target:  5'- uGUAGCGGUCGUUguCaGGCACCACGu -3'
miRNA:   3'- gCAUCGCCAGCGGguGgUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 196009 0.77 0.298823
Target:  5'- uGUGGCGuGUCGCCCuCCGGCcauCCGCu -3'
miRNA:   3'- gCAUCGC-CAGCGGGuGGUCGu--GGUGc -5'
14623 5' -59.4 NC_003521.1 + 109560 0.77 0.298823
Target:  5'- uCGUGGUGGUCGUCgGCUAGCAUgCGCGu -3'
miRNA:   3'- -GCAUCGCCAGCGGgUGGUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 89013 0.77 0.312119
Target:  5'- ---cGCGGgC-CCCACCGGCGCCACGg -3'
miRNA:   3'- gcauCGCCaGcGGGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 228468 0.76 0.332897
Target:  5'- gGUAGCGacUCGCCCACCacgcccAGCACCAUa -3'
miRNA:   3'- gCAUCGCc-AGCGGGUGG------UCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 57412 0.76 0.354671
Target:  5'- cCGU-GCGGUCGCCCACC-GUcUCGCGg -3'
miRNA:   3'- -GCAuCGCCAGCGGGUGGuCGuGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 135371 0.75 0.377431
Target:  5'- cCGcGGCGGuuaUCGCCCGCgGGCGCCAa- -3'
miRNA:   3'- -GCaUCGCC---AGCGGGUGgUCGUGGUgc -5'
14623 5' -59.4 NC_003521.1 + 149180 0.75 0.385233
Target:  5'- uCGgcGCGcGUCG-CCACCGGCgGCCACGa -3'
miRNA:   3'- -GCauCGC-CAGCgGGUGGUCG-UGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.