miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 111251 0.65 0.890757
Target:  5'- gCGgcGCGGcggagcagccaucgUCggGCCCgccguGCCAGCGCCGCc -3'
miRNA:   3'- -GCauCGCC--------------AG--CGGG-----UGGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 118097 0.66 0.861618
Target:  5'- gCGgcGCcGUCGCCCAcgaccacgaccgccuCCAGCcCCGCc -3'
miRNA:   3'- -GCauCGcCAGCGGGU---------------GGUCGuGGUGc -5'
14623 5' -59.4 NC_003521.1 + 211139 0.66 0.876976
Target:  5'- aCGcAGCGGaucauccuccagUCGCCCAUgguguuuuucggaGGCGCCGCGc -3'
miRNA:   3'- -GCaUCGCC------------AGCGGGUGg------------UCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 124728 0.66 0.872879
Target:  5'- uCGUacgAGCGGUCgagcgagaaagGCCCAugaUCAGCAgCCGCu -3'
miRNA:   3'- -GCA---UCGCCAG-----------CGGGU---GGUCGU-GGUGc -5'
14623 5' -59.4 NC_003521.1 + 57480 0.66 0.865897
Target:  5'- cCGUGGCaGUggcacuucuUGCCCAUgaCGGCGCgCACGg -3'
miRNA:   3'- -GCAUCGcCA---------GCGGGUG--GUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 88074 0.66 0.865897
Target:  5'- gGUcGGCGG-CGCCCgugACCAcGgGCCACu -3'
miRNA:   3'- gCA-UCGCCaGCGGG---UGGU-CgUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 187874 0.66 0.865897
Target:  5'- -aUGGCGGUCa-CCACCucgGGCGgCACGg -3'
miRNA:   3'- gcAUCGCCAGcgGGUGG---UCGUgGUGC- -5'
14623 5' -59.4 NC_003521.1 + 40804 0.66 0.865897
Target:  5'- cCGgcGCGGucagcuauUCGCCUcggggcgggGCCcGCGCCAUGg -3'
miRNA:   3'- -GCauCGCC--------AGCGGG---------UGGuCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 96859 0.66 0.872879
Target:  5'- cCGUgacGGCGaaguuggguGUC-CCCACCAcCACCACGa -3'
miRNA:   3'- -GCA---UCGC---------CAGcGGGUGGUcGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 31517 0.66 0.872879
Target:  5'- cCGUGGgcaagaGGaaguaaUCGUCCACCAGCGuCUGCGa -3'
miRNA:   3'- -GCAUCg-----CC------AGCGGGUGGUCGU-GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 126902 0.66 0.858728
Target:  5'- cCGUGGCGauGUCcUCCACCAGC-UCGCu -3'
miRNA:   3'- -GCAUCGC--CAGcGGGUGGUCGuGGUGc -5'
14623 5' -59.4 NC_003521.1 + 40482 0.66 0.872879
Target:  5'- uGUGuccGCGG-CGCgCCA-CGGCGCCGCa -3'
miRNA:   3'- gCAU---CGCCaGCG-GGUgGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 232375 0.66 0.872189
Target:  5'- gCGaAGCGGagGUCCACCGucucgcgcuggcuGCGCCuGCGg -3'
miRNA:   3'- -GCaUCGCCagCGGGUGGU-------------CGUGG-UGC- -5'
14623 5' -59.4 NC_003521.1 + 74145 0.66 0.875618
Target:  5'- aCGUGGCgcgccacggggcccaGGUgcCGCUgGCCGacuGCGCCGCGg -3'
miRNA:   3'- -GCAUCG---------------CCA--GCGGgUGGU---CGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 228985 0.66 0.865897
Target:  5'- gCGcgGGCGG-CGCaggACCGGCAgCACGg -3'
miRNA:   3'- -GCa-UCGCCaGCGgg-UGGUCGUgGUGC- -5'
14623 5' -59.4 NC_003521.1 + 58782 0.66 0.858728
Target:  5'- --gGGCGG-CGCgCGCCGGCgACgACGc -3'
miRNA:   3'- gcaUCGCCaGCGgGUGGUCG-UGgUGC- -5'
14623 5' -59.4 NC_003521.1 + 144937 0.66 0.858728
Target:  5'- uGUcGCGcGUCGCCgCGCUGGC-UCGCGa -3'
miRNA:   3'- gCAuCGC-CAGCGG-GUGGUCGuGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 130274 0.66 0.872879
Target:  5'- ---cGUGGgCGCCCucuCCGGCuACCugGg -3'
miRNA:   3'- gcauCGCCaGCGGGu--GGUCG-UGGugC- -5'
14623 5' -59.4 NC_003521.1 + 68716 0.66 0.858728
Target:  5'- cCGUGGCGccGUCGgCCGCCcGCACggacuucauCACGc -3'
miRNA:   3'- -GCAUCGC--CAGCgGGUGGuCGUG---------GUGC- -5'
14623 5' -59.4 NC_003521.1 + 165760 0.66 0.868713
Target:  5'- --cGGCGGcUUGCCCaucaucgugccgaagGCCAGC-CCGCu -3'
miRNA:   3'- gcaUCGCC-AGCGGG---------------UGGUCGuGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.