miRNA display CGI


Results 1 - 20 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 224979 1.07 0.00322
Target:  5'- uCGUAGCGGUCGCCCACCAGCACCACGc -3'
miRNA:   3'- -GCAUCGCCAGCGGGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 89844 0.84 0.125707
Target:  5'- cCGUAGCcgauGUCGgCCGCCAGCGCCGCGu -3'
miRNA:   3'- -GCAUCGc---CAGCgGGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 203336 0.81 0.168155
Target:  5'- gCGUGGCgauGGgggUGCCCugCGGCACCACGg -3'
miRNA:   3'- -GCAUCG---CCa--GCGGGugGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 223970 0.78 0.28597
Target:  5'- uGUAGCGGUCGUUguCaGGCACCACGu -3'
miRNA:   3'- gCAUCGCCAGCGGguGgUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 196009 0.77 0.298823
Target:  5'- uGUGGCGuGUCGCCCuCCGGCcauCCGCu -3'
miRNA:   3'- gCAUCGC-CAGCGGGuGGUCGu--GGUGc -5'
14623 5' -59.4 NC_003521.1 + 109560 0.77 0.298823
Target:  5'- uCGUGGUGGUCGUCgGCUAGCAUgCGCGu -3'
miRNA:   3'- -GCAUCGCCAGCGGgUGGUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 196920 0.77 0.312119
Target:  5'- aGUugAGCGcGUCGUCCACCGGCAgCACc -3'
miRNA:   3'- gCA--UCGC-CAGCGGGUGGUCGUgGUGc -5'
14623 5' -59.4 NC_003521.1 + 89013 0.77 0.312119
Target:  5'- ---cGCGGgC-CCCACCGGCGCCACGg -3'
miRNA:   3'- gcauCGCCaGcGGGUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 118587 0.77 0.318934
Target:  5'- aCGUGGCGG-CGCUCagucGCCGGCACcCGCGc -3'
miRNA:   3'- -GCAUCGCCaGCGGG----UGGUCGUG-GUGC- -5'
14623 5' -59.4 NC_003521.1 + 76240 0.76 0.332897
Target:  5'- gCGUGGCGGUuacUGUCuCGCCAGCACCggugGCGa -3'
miRNA:   3'- -GCAUCGCCA---GCGG-GUGGUCGUGG----UGC- -5'
14623 5' -59.4 NC_003521.1 + 228468 0.76 0.332897
Target:  5'- gGUAGCGacUCGCCCACCacgcccAGCACCAUa -3'
miRNA:   3'- gCAUCGCc-AGCGGGUGG------UCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 155341 0.76 0.347302
Target:  5'- --cGGCGGgggCGCgggCACCGGCACCACGa -3'
miRNA:   3'- gcaUCGCCa--GCGg--GUGGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 57412 0.76 0.354671
Target:  5'- cCGU-GCGGUCGCCCACC-GUcUCGCGg -3'
miRNA:   3'- -GCAuCGCCAGCGGGUGGuCGuGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 178959 0.76 0.362149
Target:  5'- cCGUGGUGGUCGUCauggACaGGCGCCGCGg -3'
miRNA:   3'- -GCAUCGCCAGCGGg---UGgUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 128361 0.76 0.369736
Target:  5'- gGUGGCcccgccGGgcgCGCCCACCAGgGCCGCc -3'
miRNA:   3'- gCAUCG------CCa--GCGGGUGGUCgUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 135371 0.75 0.377431
Target:  5'- cCGcGGCGGuuaUCGCCCGCgGGCGCCAa- -3'
miRNA:   3'- -GCaUCGCC---AGCGGGUGgUCGUGGUgc -5'
14623 5' -59.4 NC_003521.1 + 125431 0.75 0.384447
Target:  5'- cCGUGGCGGcCGCCCgcgcccugcacauGCCGGC-CCugGc -3'
miRNA:   3'- -GCAUCGCCaGCGGG-------------UGGUCGuGGugC- -5'
14623 5' -59.4 NC_003521.1 + 182380 0.75 0.385232
Target:  5'- gGUGcGCGGaaaguUCGCCCGgCAGCGCUGCGg -3'
miRNA:   3'- gCAU-CGCC-----AGCGGGUgGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 134699 0.75 0.385233
Target:  5'- gGUGGCGGUaggUGCCCACgGcCGCCACGc -3'
miRNA:   3'- gCAUCGCCA---GCGGGUGgUcGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 149180 0.75 0.385233
Target:  5'- uCGgcGCGcGUCG-CCACCGGCgGCCACGa -3'
miRNA:   3'- -GCauCGC-CAGCgGGUGGUCG-UGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.