miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 5' -59.4 NC_003521.1 + 42964 0.66 0.879668
Target:  5'- --cAGCGaGcgCGaCCCGCCGGCGCCcaccgACGa -3'
miRNA:   3'- gcaUCGC-Ca-GC-GGGUGGUCGUGG-----UGC- -5'
14623 5' -59.4 NC_003521.1 + 101446 0.66 0.879668
Target:  5'- gGgcGCGGugaacugcUCGCUCACguGCGCCuCGu -3'
miRNA:   3'- gCauCGCC--------AGCGGGUGguCGUGGuGC- -5'
14623 5' -59.4 NC_003521.1 + 33121 0.66 0.879668
Target:  5'- gCGUAGCGG--GCCUucuCCAGCACgC-CGa -3'
miRNA:   3'- -GCAUCGCCagCGGGu--GGUCGUG-GuGC- -5'
14623 5' -59.4 NC_003521.1 + 192314 0.66 0.879668
Target:  5'- gGUAGCGG-CGUCgG-CGGCACCGUGg -3'
miRNA:   3'- gCAUCGCCaGCGGgUgGUCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 154467 0.66 0.879668
Target:  5'- ---cGCuGUUGgUCACCGGCACCGCc -3'
miRNA:   3'- gcauCGcCAGCgGGUGGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 63018 0.66 0.879668
Target:  5'- --cGGCGG-CGCCCACgAcGC-CCACc -3'
miRNA:   3'- gcaUCGCCaGCGGGUGgU-CGuGGUGc -5'
14623 5' -59.4 NC_003521.1 + 74316 0.66 0.879668
Target:  5'- cCGUGcucuuCGGUCGCCUGCacccuCAGCACCugcACGa -3'
miRNA:   3'- -GCAUc----GCCAGCGGGUG-----GUCGUGG---UGC- -5'
14623 5' -59.4 NC_003521.1 + 165486 0.66 0.879668
Target:  5'- gGUAGUcGUCGCgggCCGCCgucAGCAUCugGg -3'
miRNA:   3'- gCAUCGcCAGCG---GGUGG---UCGUGGugC- -5'
14623 5' -59.4 NC_003521.1 + 167629 0.66 0.879668
Target:  5'- uCGgGGuCGGUCacgucgauGCCgGCCAGCuCCGCGc -3'
miRNA:   3'- -GCaUC-GCCAG--------CGGgUGGUCGuGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 90833 0.66 0.879668
Target:  5'- uCGUgcGGCGGgugCGCgCCGCCcguGCugcugcugACCACGg -3'
miRNA:   3'- -GCA--UCGCCa--GCG-GGUGGu--CG--------UGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 196739 0.66 0.877652
Target:  5'- gGUGGCGGcggcgccugcaccgUCugcuGCCCcgGCCGGCgcgACCGCGg -3'
miRNA:   3'- gCAUCGCC--------------AG----CGGG--UGGUCG---UGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 211139 0.66 0.876976
Target:  5'- aCGcAGCGGaucauccuccagUCGCCCAUgguguuuuucggaGGCGCCGCGc -3'
miRNA:   3'- -GCaUCGCC------------AGCGGGUGg------------UCGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 74145 0.66 0.875618
Target:  5'- aCGUGGCgcgccacggggcccaGGUgcCGCUgGCCGacuGCGCCGCGg -3'
miRNA:   3'- -GCAUCG---------------CCA--GCGGgUGGU---CGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 31517 0.66 0.872879
Target:  5'- cCGUGGgcaagaGGaaguaaUCGUCCACCAGCGuCUGCGa -3'
miRNA:   3'- -GCAUCg-----CC------AGCGGGUGGUCGU-GGUGC- -5'
14623 5' -59.4 NC_003521.1 + 124728 0.66 0.872879
Target:  5'- uCGUacgAGCGGUCgagcgagaaagGCCCAugaUCAGCAgCCGCu -3'
miRNA:   3'- -GCA---UCGCCAG-----------CGGGU---GGUCGU-GGUGc -5'
14623 5' -59.4 NC_003521.1 + 130274 0.66 0.872879
Target:  5'- ---cGUGGgCGCCCucuCCGGCuACCugGg -3'
miRNA:   3'- gcauCGCCaGCGGGu--GGUCG-UGGugC- -5'
14623 5' -59.4 NC_003521.1 + 96859 0.66 0.872879
Target:  5'- cCGUgacGGCGaaguuggguGUC-CCCACCAcCACCACGa -3'
miRNA:   3'- -GCA---UCGC---------CAGcGGGUGGUcGUGGUGC- -5'
14623 5' -59.4 NC_003521.1 + 40482 0.66 0.872879
Target:  5'- uGUGuccGCGG-CGCgCCA-CGGCGCCGCa -3'
miRNA:   3'- gCAU---CGCCaGCG-GGUgGUCGUGGUGc -5'
14623 5' -59.4 NC_003521.1 + 227904 0.66 0.872878
Target:  5'- --cGGCccuGGUCcCgCCACCAGCGCCAgGc -3'
miRNA:   3'- gcaUCG---CCAGcG-GGUGGUCGUGGUgC- -5'
14623 5' -59.4 NC_003521.1 + 18923 0.66 0.872878
Target:  5'- gGUGGCGc-CGCgCGCCGGCAauCCGCc -3'
miRNA:   3'- gCAUCGCcaGCGgGUGGUCGU--GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.