miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 174224 0.67 0.999436
Target:  5'- cGCGGGUCGGgcaggGGCGCgUCGgagcuCAGa -3'
miRNA:   3'- -CGCCUAGCU-----UCGCGaGGCaauuuGUC- -5'
14626 3' -49.6 NC_003521.1 + 178793 0.66 0.999633
Target:  5'- cGCGGGacgggCGAGGCauGC-CCGgcGGGCGGg -3'
miRNA:   3'- -CGCCUa----GCUUCG--CGaGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 39997 0.67 0.999436
Target:  5'- gGCGGAUCGGAGUccGCaaCGg-GAACGGc -3'
miRNA:   3'- -CGCCUAGCUUCG--CGagGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 93981 0.68 0.998498
Target:  5'- gGCGGAggcgaggaCGAGGCGCcCCcc-AGACAGg -3'
miRNA:   3'- -CGCCUa-------GCUUCGCGaGGcaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223687 0.66 0.999633
Target:  5'- uCGGG-CGAAGCGCgCCG----GCAGg -3'
miRNA:   3'- cGCCUaGCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 97576 0.66 0.999544
Target:  5'- cGCGGAUgGAGGUggugaugacguGCUC-GUUgGAGCAGg -3'
miRNA:   3'- -CGCCUAgCUUCG-----------CGAGgCAA-UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 85395 0.66 0.999701
Target:  5'- aGCGGGUCGGccAGCucgcacaGCUCCuggUAGGCGc -3'
miRNA:   3'- -CGCCUAGCU--UCG-------CGAGGca-AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 212959 0.66 0.999817
Target:  5'- uGCGG-UCGAGGUcCUCCGUgccguuACGa -3'
miRNA:   3'- -CGCCuAGCUUCGcGAGGCAauu---UGUc -5'
14626 3' -49.6 NC_003521.1 + 102293 0.69 0.996485
Target:  5'- cGCGGcaagaaGUCGAGGUGCgCCGgacccAGCGGg -3'
miRNA:   3'- -CGCC------UAGCUUCGCGaGGCaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 126291 0.69 0.99589
Target:  5'- aGCGGAaaUCGAuGGUGC-CCGUggcGGCGGu -3'
miRNA:   3'- -CGCCU--AGCU-UCGCGaGGCAau-UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 85271 0.67 0.998752
Target:  5'- cGCcGGUCGcAGGCGCUCCuugacaaucucGUUGGAgAGa -3'
miRNA:   3'- -CGcCUAGC-UUCGCGAGG-----------CAAUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 111034 0.67 0.998968
Target:  5'- cGCGG-UCGGccucGGCGCgcaCGUgcgcgGGACAGg -3'
miRNA:   3'- -CGCCuAGCU----UCGCGag-GCAa----UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 60189 0.68 0.998498
Target:  5'- cGCGGcgUGAGaacGCGCgcaCGUUAGAUGGa -3'
miRNA:   3'- -CGCCuaGCUU---CGCGag-GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 202737 0.7 0.987603
Target:  5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3'
miRNA:   3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 235958 0.66 0.999817
Target:  5'- aGCGGAUCGAGGcCGCgauucgaCGUc-GACGc -3'
miRNA:   3'- -CGCCUAGCUUC-GCGag-----GCAauUUGUc -5'
14626 3' -49.6 NC_003521.1 + 135812 0.66 0.999733
Target:  5'- gGCGGAggGAGGCGCggcgacgaacgcucCCGUgcccaUGAGCAc -3'
miRNA:   3'- -CGCCUagCUUCGCGa-------------GGCA-----AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 109288 0.66 0.999707
Target:  5'- cCGGGUagGAGGUGC-CC-UUGAGCAGg -3'
miRNA:   3'- cGCCUAg-CUUCGCGaGGcAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 45226 0.66 0.999707
Target:  5'- uGauGAUCGAAgGCGCcgcCCGgcAGACGGg -3'
miRNA:   3'- -CgcCUAGCUU-CGCGa--GGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 222377 0.69 0.99589
Target:  5'- cGCGG-UCGAAGCGgCacaggCCGcgcgucUUGAGCAGg -3'
miRNA:   3'- -CGCCuAGCUUCGC-Ga----GGC------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 89469 0.69 0.996485
Target:  5'- cGCGGAUC---GCGgUCCGcaGAGCGGg -3'
miRNA:   3'- -CGCCUAGcuuCGCgAGGCaaUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.