miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 178723 0.75 0.918379
Target:  5'- cGCGGGcgcCGAAGCGUUCCcgGUUGGACuGg -3'
miRNA:   3'- -CGCCUa--GCUUCGCGAGG--CAAUUUGuC- -5'
14626 3' -49.6 NC_003521.1 + 159103 0.67 0.999306
Target:  5'- uUGGAgCGggGCGaCUCCGUgcucuccugGGACGu -3'
miRNA:   3'- cGCCUaGCuuCGC-GAGGCAa--------UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 39997 0.67 0.999436
Target:  5'- gGCGGAUCGGAGUccGCaaCGg-GAACGGc -3'
miRNA:   3'- -CGCCUAGCUUCG--CGagGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 95017 0.66 0.999826
Target:  5'- uUGGcGUCGAagacgaucaccuccgAGCGCUCCGUcuuguugagguaGAGCAGg -3'
miRNA:   3'- cGCC-UAGCU---------------UCGCGAGGCAa-----------UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 52174 0.7 0.987603
Target:  5'- cGCGGGUCcgcccGCGaUUCCGUUGAcGCAGg -3'
miRNA:   3'- -CGCCUAGcuu--CGC-GAGGCAAUU-UGUC- -5'
14626 3' -49.6 NC_003521.1 + 50397 0.7 0.990377
Target:  5'- uGCGGcuacuacucgccGUCGAcGCGCUCCGcgGAcucGCGGu -3'
miRNA:   3'- -CGCC------------UAGCUuCGCGAGGCaaUU---UGUC- -5'
14626 3' -49.6 NC_003521.1 + 216068 0.69 0.993953
Target:  5'- uGCGGGUCGAuugaugucgcguuacGGgGUgugCCGUUAAAUAc -3'
miRNA:   3'- -CGCCUAGCU---------------UCgCGa--GGCAAUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 86599 0.69 0.994455
Target:  5'- gGCGG--CGAAGCGCUCgCGcgAGAgGGa -3'
miRNA:   3'- -CGCCuaGCUUCGCGAG-GCaaUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 102293 0.69 0.996485
Target:  5'- cGCGGcaagaaGUCGAGGUGCgCCGgacccAGCGGg -3'
miRNA:   3'- -CGCC------UAGCUUCGCGaGGCaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 212231 0.67 0.999151
Target:  5'- aGCGGGU-GAGGuCGCgcucgCCGggGGACAc -3'
miRNA:   3'- -CGCCUAgCUUC-GCGa----GGCaaUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 60189 0.68 0.998498
Target:  5'- cGCGGcgUGAGaacGCGCgcaCGUUAGAUGGa -3'
miRNA:   3'- -CGCCuaGCUU---CGCGag-GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 126291 0.69 0.99589
Target:  5'- aGCGGAaaUCGAuGGUGC-CCGUggcGGCGGu -3'
miRNA:   3'- -CGCCU--AGCU-UCGCGaGGCAau-UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 135795 0.74 0.939378
Target:  5'- gGCGGGccguccUCGAAGCGCUcCCGUUcccgcuccuGCAGc -3'
miRNA:   3'- -CGCCU------AGCUUCGCGA-GGCAAuu-------UGUC- -5'
14626 3' -49.6 NC_003521.1 + 85271 0.67 0.998752
Target:  5'- cGCcGGUCGcAGGCGCUCCuugacaaucucGUUGGAgAGa -3'
miRNA:   3'- -CGcCUAGC-UUCGCGAGG-----------CAAUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 167120 0.72 0.966993
Target:  5'- cCGGGUCGcuGCGCUCCacgaagcucUUGAGCAGc -3'
miRNA:   3'- cGCCUAGCuuCGCGAGGc--------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 178904 0.69 0.995216
Target:  5'- uGCGGAUCGuAGCGgUCacccaucacguCGggGAACGGc -3'
miRNA:   3'- -CGCCUAGCuUCGCgAG-----------GCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 111034 0.67 0.998968
Target:  5'- cGCGG-UCGGccucGGCGCgcaCGUgcgcgGGACAGg -3'
miRNA:   3'- -CGCCuAGCU----UCGCGag-GCAa----UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223942 0.67 0.999436
Target:  5'- aGgGGGUCGAGGCGg-CCGcgggGAACGc -3'
miRNA:   3'- -CgCCUAGCUUCGCgaGGCaa--UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 166220 0.71 0.980247
Target:  5'- cGCGGcggCGAGGCGCgCCGgcc-GCGGg -3'
miRNA:   3'- -CGCCua-GCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 104175 0.7 0.992638
Target:  5'- cGCGGGUCGcacGGCGUUgCGguagUAGACGu -3'
miRNA:   3'- -CGCCUAGCu--UCGCGAgGCa---AUUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.