miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 8415 0.66 0.798326
Target:  5'- gCG-CUGGCGUugccgUGCCGCagGCGCagccagcgCGAg -3'
miRNA:   3'- -GCaGACCGCG-----ACGGCGagCGCGa-------GCU- -5'
14627 3' -61.4 NC_003521.1 + 99010 0.67 0.754807
Target:  5'- --aCUGGUGCUGuuGC---CGCUCGAg -3'
miRNA:   3'- gcaGACCGCGACggCGagcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 28977 0.67 0.754807
Target:  5'- gCGaUCgUGGuCGCUGCCGUaCGCGaaCGAg -3'
miRNA:   3'- -GC-AG-ACC-GCGACGGCGaGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 209528 0.66 0.806664
Target:  5'- cCGUCgc-CGCUGCCGCgguuaUGCGCcCGGc -3'
miRNA:   3'- -GCAGaccGCGACGGCGa----GCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 156620 0.71 0.472077
Target:  5'- gCGcCUGGUGCUGCgcgaCGCccugggcuuccucuUCGUGCUCGAc -3'
miRNA:   3'- -GCaGACCGCGACG----GCG--------------AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 86692 0.72 0.457276
Target:  5'- aCG-CUGGCGCUGCCGCccUUGCccgGCcgCGAg -3'
miRNA:   3'- -GCaGACCGCGACGGCG--AGCG---CGa-GCU- -5'
14627 3' -61.4 NC_003521.1 + 227363 0.77 0.249705
Target:  5'- cCGUCgacGGCGCUaccGCCGCU-GCGCUUGAc -3'
miRNA:   3'- -GCAGa--CCGCGA---CGGCGAgCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 165939 0.7 0.538137
Target:  5'- cCGUCUcGCGCagcagcGCCGUgUCGUGCUCGGg -3'
miRNA:   3'- -GCAGAcCGCGa-----CGGCG-AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 225756 0.7 0.575675
Target:  5'- aGUgCUGuuGCagcacgcGCCGCUCGCGCUCGc -3'
miRNA:   3'- gCA-GACcgCGa------CGGCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 56137 0.7 0.575675
Target:  5'- aCGUCgGGCGagUGCgGCUCGUGCUg-- -3'
miRNA:   3'- -GCAGaCCGCg-ACGgCGAGCGCGAgcu -5'
14627 3' -61.4 NC_003521.1 + 153431 0.66 0.789856
Target:  5'- gGUCa-GCaGCaGCCGgUCGCGCUCGu -3'
miRNA:   3'- gCAGacCG-CGaCGGCgAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 43107 0.66 0.789856
Target:  5'- aCGagCUGaccaaGCGCUGCgGCgaGCGCUCGGc -3'
miRNA:   3'- -GCa-GAC-----CGCGACGgCGagCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 197577 0.66 0.772551
Target:  5'- uCGggagCUGGCGCUGCUaCUCGCcCUUc- -3'
miRNA:   3'- -GCa---GACCGCGACGGcGAGCGcGAGcu -5'
14627 3' -61.4 NC_003521.1 + 59254 0.66 0.772551
Target:  5'- ---gUGGgGCUGCUGCggGCGUUCGu -3'
miRNA:   3'- gcagACCgCGACGGCGagCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 144273 0.66 0.771674
Target:  5'- uGUCUgcugggcgagcacGGCgacucgcuGCUGCCGCaCGCGCUgCGGu -3'
miRNA:   3'- gCAGA-------------CCG--------CGACGGCGaGCGCGA-GCU- -5'
14627 3' -61.4 NC_003521.1 + 137302 0.67 0.736685
Target:  5'- gCGggUGGCGCgGCUGCU-GCGCggCGAc -3'
miRNA:   3'- -GCagACCGCGaCGGCGAgCGCGa-GCU- -5'
14627 3' -61.4 NC_003521.1 + 32876 0.67 0.740337
Target:  5'- gGUUUGGCGCccgcgccgccggugcUGCCGC-CGUGCcCGc -3'
miRNA:   3'- gCAGACCGCG---------------ACGGCGaGCGCGaGCu -5'
14627 3' -61.4 NC_003521.1 + 19078 0.67 0.736685
Target:  5'- aCG-CUGaCGCUGUCGUUC-CGCUUGAu -3'
miRNA:   3'- -GCaGACcGCGACGGCGAGcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 110293 0.69 0.632914
Target:  5'- gGUCUGGCGCaGCacgaaGUugUCGCGCUgGu -3'
miRNA:   3'- gCAGACCGCGaCGg----CG--AGCGCGAgCu -5'
14627 3' -61.4 NC_003521.1 + 165794 0.69 0.623339
Target:  5'- cCG-CUGGCGCUGCCG-UCGCaGUagGGg -3'
miRNA:   3'- -GCaGACCGCGACGGCgAGCG-CGagCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.