miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 162013 0.68 0.680647
Target:  5'- aCGaCUGGCGCcaccaggGCCGCUCGuCGaccugCGAc -3'
miRNA:   3'- -GCaGACCGCGa------CGGCGAGC-GCga---GCU- -5'
14627 3' -61.4 NC_003521.1 + 226862 0.68 0.671142
Target:  5'- aGUCacgGGCGCgguacuUGUCGC-CGUGCUCGu -3'
miRNA:   3'- gCAGa--CCGCG------ACGGCGaGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 22739 0.69 0.632914
Target:  5'- uCGUCaccGGCGCcGCCGcCUCGCuguGCUuCGAg -3'
miRNA:   3'- -GCAGa--CCGCGaCGGC-GAGCG---CGA-GCU- -5'
14627 3' -61.4 NC_003521.1 + 97276 0.69 0.623339
Target:  5'- ---aUGGCgGCUGCUGCUCGuCGC-CGGc -3'
miRNA:   3'- gcagACCG-CGACGGCGAGC-GCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 136881 0.66 0.772551
Target:  5'- gCGggUGGCGCcGgUGUUCGCGgUCGAc -3'
miRNA:   3'- -GCagACCGCGaCgGCGAGCGCgAGCU- -5'
14627 3' -61.4 NC_003521.1 + 89181 0.67 0.718243
Target:  5'- gGcCUGGCcCUGCUGgaCGUGCUCa- -3'
miRNA:   3'- gCaGACCGcGACGGCgaGCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 169765 0.68 0.652056
Target:  5'- aCGUCggcccaUGGCGCcG-CGCUUuggGCGCUCGAg -3'
miRNA:   3'- -GCAG------ACCGCGaCgGCGAG---CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 167591 0.69 0.604213
Target:  5'- uGUCgauggagagcGGCGCgcagaggcGCCGCagGCGCUCGGg -3'
miRNA:   3'- gCAGa---------CCGCGa-------CGGCGagCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 15701 0.67 0.708923
Target:  5'- aCGUCgaccaGGUGCUGUCGCUCG-GCa--- -3'
miRNA:   3'- -GCAGa----CCGCGACGGCGAGCgCGagcu -5'
14627 3' -61.4 NC_003521.1 + 14388 0.69 0.594674
Target:  5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3'
miRNA:   3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 184656 0.68 0.661609
Target:  5'- uGUC--GCGCUGCgUGUUCGCGCgcagCGAg -3'
miRNA:   3'- gCAGacCGCGACG-GCGAGCGCGa---GCU- -5'
14627 3' -61.4 NC_003521.1 + 84453 0.68 0.690117
Target:  5'- gGUCaGGCGCUGCaggaGaCgguaGCGCUUGAg -3'
miRNA:   3'- gCAGaCCGCGACGg---C-Gag--CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 180653 0.68 0.652056
Target:  5'- uGUCUguagcggcuccaGGCGUUGgCGCgaggccugCGUGCUCGAc -3'
miRNA:   3'- gCAGA------------CCGCGACgGCGa-------GCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 36794 0.69 0.642489
Target:  5'- aCGcgCU-GCGgaGCCGCUCGCGgaCGGc -3'
miRNA:   3'- -GCa-GAcCGCgaCGGCGAGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 25623 0.69 0.632914
Target:  5'- cCGggCUGGCGCUGCUGg-CGCGUgaccaCGAc -3'
miRNA:   3'- -GCa-GACCGCGACGGCgaGCGCGa----GCU- -5'
14627 3' -61.4 NC_003521.1 + 139321 0.69 0.632914
Target:  5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3'
miRNA:   3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 121133 0.66 0.789856
Target:  5'- aCGcCgUGGaGCUGCUG-UCGUGCUCGGa -3'
miRNA:   3'- -GCaG-ACCgCGACGGCgAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 101366 0.66 0.780396
Target:  5'- gGUCgaguucCGCUGCCGCuacaccuUCGCGCgCGAc -3'
miRNA:   3'- gCAGacc---GCGACGGCG-------AGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 28977 0.67 0.754807
Target:  5'- gCGaUCgUGGuCGCUGCCGUaCGCGaaCGAg -3'
miRNA:   3'- -GC-AG-ACC-GCGACGGCGaGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 174449 0.67 0.718243
Target:  5'- aCGcgCUGGUGUcGCUGCUCGcCGC-CGGc -3'
miRNA:   3'- -GCa-GACCGCGaCGGCGAGC-GCGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.