Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 165989 | 0.75 | 0.297983 |
Target: 5'- gCGUgaGGCGCgggacGCCG-UCGCGCUCGGc -3' miRNA: 3'- -GCAgaCCGCGa----CGGCgAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 36794 | 0.69 | 0.642489 |
Target: 5'- aCGcgCU-GCGgaGCCGCUCGCGgaCGGc -3' miRNA: 3'- -GCa-GAcCGCgaCGGCGAGCGCgaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 169765 | 0.68 | 0.652056 |
Target: 5'- aCGUCggcccaUGGCGCcG-CGCUUuggGCGCUCGAg -3' miRNA: 3'- -GCAG------ACCGCGaCgGCGAG---CGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 212420 | 0.66 | 0.806664 |
Target: 5'- uGUCggaGGCGUUGaucuggcgaCaCUCGUGCUCGAa -3' miRNA: 3'- gCAGa--CCGCGACg--------GcGAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 206309 | 0.72 | 0.457276 |
Target: 5'- gCGUCUcGGCccGCgGCCGCUaccUGCGCUCGc -3' miRNA: 3'- -GCAGA-CCG--CGaCGGCGA---GCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 95094 | 0.71 | 0.501475 |
Target: 5'- -cUCgGGCGCcuugagcgGCCGCgCGCGCUUGAg -3' miRNA: 3'- gcAGaCCGCGa-------CGGCGaGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 75986 | 0.7 | 0.544651 |
Target: 5'- aGUCUGGCGCcgGCCGCcgguUCcuccucccccgcggGCGCUCc- -3' miRNA: 3'- gCAGACCGCGa-CGGCG----AG--------------CGCGAGcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 175302 | 0.7 | 0.547451 |
Target: 5'- gGUCUcGGCGUcGCCcaGCUgacaGCGCUCGAu -3' miRNA: 3'- gCAGA-CCGCGaCGG--CGAg---CGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 14388 | 0.69 | 0.594674 |
Target: 5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3' miRNA: 3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 22739 | 0.69 | 0.632914 |
Target: 5'- uCGUCaccGGCGCcGCCGcCUCGCuguGCUuCGAg -3' miRNA: 3'- -GCAGa--CCGCGaCGGC-GAGCG---CGA-GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 97276 | 0.69 | 0.623339 |
Target: 5'- ---aUGGCgGCUGCUGCUCGuCGC-CGGc -3' miRNA: 3'- gcagACCG-CGACGGCGAGC-GCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 214827 | 0.69 | 0.593722 |
Target: 5'- gGUCUgcGGCGCUGCgGCUucaucacCGUGCcCGAc -3' miRNA: 3'- gCAGA--CCGCGACGgCGA-------GCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 197851 | 0.74 | 0.331671 |
Target: 5'- uCGUCggugGGCGCcgGCgGgUCGCGCUCGc -3' miRNA: 3'- -GCAGa---CCGCGa-CGgCgAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 139321 | 0.69 | 0.632914 |
Target: 5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3' miRNA: 3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 185077 | 0.73 | 0.407133 |
Target: 5'- gCGcCUGuCGCUGCCGCccgCGCGCUgGGa -3' miRNA: 3'- -GCaGACcGCGACGGCGa--GCGCGAgCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 198762 | 0.7 | 0.547451 |
Target: 5'- uCG-CUGGuCGC-GCCGCUCGUGggCGAg -3' miRNA: 3'- -GCaGACC-GCGaCGGCGAGCGCgaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 25623 | 0.69 | 0.632914 |
Target: 5'- cCGggCUGGCGCUGCUGg-CGCGUgaccaCGAc -3' miRNA: 3'- -GCa-GACCGCGACGGCgaGCGCGa----GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 180653 | 0.68 | 0.652056 |
Target: 5'- uGUCUguagcggcuccaGGCGUUGgCGCgaggccugCGUGCUCGAc -3' miRNA: 3'- gCAGA------------CCGCGACgGCGa-------GCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 223780 | 0.73 | 0.407133 |
Target: 5'- gCGcugCUGGUGCUGCCGUugUCGuCGCUCc- -3' miRNA: 3'- -GCa--GACCGCGACGGCG--AGC-GCGAGcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 53465 | 0.71 | 0.528879 |
Target: 5'- uCGUCgGGaUGCUGCUGCUCGaGCcCGAa -3' miRNA: 3'- -GCAGaCC-GCGACGGCGAGCgCGaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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