miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 43883 0.67 0.716384
Target:  5'- cCGUCgcccacgcuaccGGUGCUGCCGgUgacgaCGCGCUCa- -3'
miRNA:   3'- -GCAGa-----------CCGCGACGGCgA-----GCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 56137 0.7 0.575675
Target:  5'- aCGUCgGGCGagUGCgGCUCGUGCUg-- -3'
miRNA:   3'- -GCAGaCCGCg-ACGgCGAGCGCGAgcu -5'
14627 3' -61.4 NC_003521.1 + 165794 0.69 0.623339
Target:  5'- cCG-CUGGCGCUGCCG-UCGCaGUagGGg -3'
miRNA:   3'- -GCaGACCGCGACGGCgAGCG-CGagCU- -5'
14627 3' -61.4 NC_003521.1 + 110293 0.69 0.632914
Target:  5'- gGUCUGGCGCaGCacgaaGUugUCGCGCUgGu -3'
miRNA:   3'- gCAGACCGCGaCGg----CG--AGCGCGAgCu -5'
14627 3' -61.4 NC_003521.1 + 120903 0.69 0.632914
Target:  5'- gGUCgGGgGCgGCUGCUUGCGUUUGc -3'
miRNA:   3'- gCAGaCCgCGaCGGCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 196144 0.69 0.632914
Target:  5'- cCGcugCUGGCGCUGCCGUUCucauGUgGCUCc- -3'
miRNA:   3'- -GCa--GACCGCGACGGCGAG----CG-CGAGcu -5'
14627 3' -61.4 NC_003521.1 + 143448 0.69 0.642489
Target:  5'- gGUCUGGcCGCUcGaCCGCcagcgCGUGCUCa- -3'
miRNA:   3'- gCAGACC-GCGA-C-GGCGa----GCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 137686 0.68 0.690117
Target:  5'- cCGcCUGGUGCUGCagcacCGCcgCGCGCUgCGc -3'
miRNA:   3'- -GCaGACCGCGACG-----GCGa-GCGCGA-GCu -5'
14627 3' -61.4 NC_003521.1 + 137618 0.68 0.699544
Target:  5'- gCG-CUGGaCGCcuaCCGCUCGCGCaUCGc -3'
miRNA:   3'- -GCaGACC-GCGac-GGCGAGCGCG-AGCu -5'
14627 3' -61.4 NC_003521.1 + 225756 0.7 0.575675
Target:  5'- aGUgCUGuuGCagcacgcGCCGCUCGCGCUCGc -3'
miRNA:   3'- gCA-GACcgCGa------CGGCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 165939 0.7 0.538137
Target:  5'- cCGUCUcGCGCagcagcGCCGUgUCGUGCUCGGg -3'
miRNA:   3'- -GCAGAcCGCGa-----CGGCG-AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 105610 0.7 0.538137
Target:  5'- cCGcUCaGGCGCUGCaGCagggCGUGCUCGGg -3'
miRNA:   3'- -GC-AGaCCGCGACGgCGa---GCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 225581 0.79 0.168531
Target:  5'- uCGUcCUGGCGCUcgGCgGcCUCGCGCUCGGc -3'
miRNA:   3'- -GCA-GACCGCGA--CGgC-GAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 227363 0.77 0.249705
Target:  5'- cCGUCgacGGCGCUaccGCCGCU-GCGCUUGAc -3'
miRNA:   3'- -GCAGa--CCGCGA---CGGCGAgCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 136567 0.75 0.304502
Target:  5'- cCGaCUGGCaGCUGCCGCUgcaccugGUGCUCGAu -3'
miRNA:   3'- -GCaGACCG-CGACGGCGAg------CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 160377 0.74 0.353191
Target:  5'- uCGUCgUGGCucuCUGCgGCUCGCGUUCGc -3'
miRNA:   3'- -GCAG-ACCGc--GACGgCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 86692 0.72 0.457276
Target:  5'- aCG-CUGGCGCUGCCGCccUUGCccgGCcgCGAg -3'
miRNA:   3'- -GCaGACCGCGACGGCG--AGCG---CGa-GCU- -5'
14627 3' -61.4 NC_003521.1 + 156620 0.71 0.472077
Target:  5'- gCGcCUGGUGCUGCgcgaCGCccugggcuuccucuUCGUGCUCGAc -3'
miRNA:   3'- -GCaGACCGCGACG----GCG--------------AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 152401 0.71 0.492479
Target:  5'- -aUCUGGCGgUGCCGCgccuucUCGCgguugcagaugaGCUCGAc -3'
miRNA:   3'- gcAGACCGCgACGGCG------AGCG------------CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 195856 0.7 0.538137
Target:  5'- gCGUCa-GCGCUGUCGcCUCGCuCUCGGg -3'
miRNA:   3'- -GCAGacCGCGACGGC-GAGCGcGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.