miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 95094 0.71 0.501475
Target:  5'- -cUCgGGCGCcuugagcgGCCGCgCGCGCUUGAg -3'
miRNA:   3'- gcAGaCCGCGa-------CGGCGaGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 97276 0.69 0.623339
Target:  5'- ---aUGGCgGCUGCUGCUCGuCGC-CGGc -3'
miRNA:   3'- gcagACCG-CGACGGCGAGC-GCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 98906 0.66 0.789856
Target:  5'- gGUCaGGCgGCUGUagugcgucUGCUCGCGCaCGGc -3'
miRNA:   3'- gCAGaCCG-CGACG--------GCGAGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 99010 0.67 0.754807
Target:  5'- --aCUGGUGCUGuuGC---CGCUCGAg -3'
miRNA:   3'- gcaGACCGCGACggCGagcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 101366 0.66 0.780396
Target:  5'- gGUCgaguucCGCUGCCGCuacaccuUCGCGCgCGAc -3'
miRNA:   3'- gCAGacc---GCGACGGCG-------AGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 105610 0.7 0.538137
Target:  5'- cCGcUCaGGCGCUGCaGCagggCGUGCUCGGg -3'
miRNA:   3'- -GC-AGaCCGCGACGgCGa---GCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 110293 0.69 0.632914
Target:  5'- gGUCUGGCGCaGCacgaaGUugUCGCGCUgGu -3'
miRNA:   3'- gCAGACCGCGaCGg----CG--AGCGCGAgCu -5'
14627 3' -61.4 NC_003521.1 + 120903 0.69 0.632914
Target:  5'- gGUCgGGgGCgGCUGCUUGCGUUUGc -3'
miRNA:   3'- gCAGaCCgCGaCGGCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 121133 0.66 0.789856
Target:  5'- aCGcCgUGGaGCUGCUG-UCGUGCUCGGa -3'
miRNA:   3'- -GCaG-ACCgCGACGGCgAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 132041 0.68 0.699544
Target:  5'- -cUgUGGUgGCUGCUGC-CGCGcCUCGAg -3'
miRNA:   3'- gcAgACCG-CGACGGCGaGCGC-GAGCU- -5'
14627 3' -61.4 NC_003521.1 + 136567 0.75 0.304502
Target:  5'- cCGaCUGGCaGCUGCCGCUgcaccugGUGCUCGAu -3'
miRNA:   3'- -GCaGACCG-CGACGGCGAg------CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 136881 0.66 0.772551
Target:  5'- gCGggUGGCGCcGgUGUUCGCGgUCGAc -3'
miRNA:   3'- -GCagACCGCGaCgGCGAGCGCgAGCU- -5'
14627 3' -61.4 NC_003521.1 + 137302 0.67 0.736685
Target:  5'- gCGggUGGCGCgGCUGCU-GCGCggCGAc -3'
miRNA:   3'- -GCagACCGCGaCGGCGAgCGCGa-GCU- -5'
14627 3' -61.4 NC_003521.1 + 137618 0.68 0.699544
Target:  5'- gCG-CUGGaCGCcuaCCGCUCGCGCaUCGc -3'
miRNA:   3'- -GCaGACC-GCGac-GGCGAGCGCG-AGCu -5'
14627 3' -61.4 NC_003521.1 + 137686 0.68 0.690117
Target:  5'- cCGcCUGGUGCUGCagcacCGCcgCGCGCUgCGc -3'
miRNA:   3'- -GCaGACCGCGACG-----GCGa-GCGCGA-GCu -5'
14627 3' -61.4 NC_003521.1 + 139321 0.69 0.632914
Target:  5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3'
miRNA:   3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 143448 0.69 0.642489
Target:  5'- gGUCUGGcCGCUcGaCCGCcagcgCGUGCUCa- -3'
miRNA:   3'- gCAGACC-GCGA-C-GGCGa----GCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 144273 0.66 0.771674
Target:  5'- uGUCUgcugggcgagcacGGCgacucgcuGCUGCCGCaCGCGCUgCGGu -3'
miRNA:   3'- gCAGA-------------CCG--------CGACGGCGaGCGCGA-GCU- -5'
14627 3' -61.4 NC_003521.1 + 152401 0.71 0.492479
Target:  5'- -aUCUGGCGgUGCCGCgccuucUCGCgguugcagaugaGCUCGAc -3'
miRNA:   3'- gcAGACCGCgACGGCG------AGCG------------CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 153431 0.66 0.789856
Target:  5'- gGUCa-GCaGCaGCCGgUCGCGCUCGu -3'
miRNA:   3'- gCAGacCG-CGaCGGCgAGCGCGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.