miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 180653 0.68 0.652056
Target:  5'- uGUCUguagcggcuccaGGCGUUGgCGCgaggccugCGUGCUCGAc -3'
miRNA:   3'- gCAGA------------CCGCGACgGCGa-------GCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 175302 0.7 0.547451
Target:  5'- gGUCUcGGCGUcGCCcaGCUgacaGCGCUCGAu -3'
miRNA:   3'- gCAGA-CCGCGaCGG--CGAg---CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 174449 0.67 0.718243
Target:  5'- aCGcgCUGGUGUcGCUGCUCGcCGC-CGGc -3'
miRNA:   3'- -GCa-GACCGCGaCGGCGAGC-GCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 172312 0.67 0.7275
Target:  5'- uGUCggUGGCGCcagGCCGgUCGCGg-CGGa -3'
miRNA:   3'- gCAG--ACCGCGa--CGGCgAGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 169862 0.67 0.705177
Target:  5'- cCGUC-GGCGUggcuccguccggaGCCGCUC-CGCUCGc -3'
miRNA:   3'- -GCAGaCCGCGa------------CGGCGAGcGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 169765 0.68 0.652056
Target:  5'- aCGUCggcccaUGGCGCcG-CGCUUuggGCGCUCGAg -3'
miRNA:   3'- -GCAG------ACCGCGaCgGCGAG---CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 167591 0.69 0.604213
Target:  5'- uGUCgauggagagcGGCGCgcagaggcGCCGCagGCGCUCGGg -3'
miRNA:   3'- gCAGa---------CCGCGa-------CGGCGagCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 165989 0.75 0.297983
Target:  5'- gCGUgaGGCGCgggacGCCG-UCGCGCUCGGc -3'
miRNA:   3'- -GCAgaCCGCGa----CGGCgAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 165939 0.7 0.538137
Target:  5'- cCGUCUcGCGCagcagcGCCGUgUCGUGCUCGGg -3'
miRNA:   3'- -GCAGAcCGCGa-----CGGCG-AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 165794 0.69 0.623339
Target:  5'- cCG-CUGGCGCUGCCG-UCGCaGUagGGg -3'
miRNA:   3'- -GCaGACCGCGACGGCgAGCG-CGagCU- -5'
14627 3' -61.4 NC_003521.1 + 164780 0.66 0.801677
Target:  5'- gCGUCUGGCggcccgcuccgaggaGCUGCCGUcggUGgGCgacCGAg -3'
miRNA:   3'- -GCAGACCG---------------CGACGGCGa--GCgCGa--GCU- -5'
14627 3' -61.4 NC_003521.1 + 162013 0.68 0.680647
Target:  5'- aCGaCUGGCGCcaccaggGCCGCUCGuCGaccugCGAc -3'
miRNA:   3'- -GCaGACCGCGa------CGGCGAGC-GCga---GCU- -5'
14627 3' -61.4 NC_003521.1 + 160377 0.74 0.353191
Target:  5'- uCGUCgUGGCucuCUGCgGCUCGCGUUCGc -3'
miRNA:   3'- -GCAG-ACCGc--GACGgCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 156620 0.71 0.472077
Target:  5'- gCGcCUGGUGCUGCgcgaCGCccugggcuuccucuUCGUGCUCGAc -3'
miRNA:   3'- -GCaGACCGCGACG----GCG--------------AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 153431 0.66 0.789856
Target:  5'- gGUCa-GCaGCaGCCGgUCGCGCUCGu -3'
miRNA:   3'- gCAGacCG-CGaCGGCgAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 152401 0.71 0.492479
Target:  5'- -aUCUGGCGgUGCCGCgccuucUCGCgguugcagaugaGCUCGAc -3'
miRNA:   3'- gcAGACCGCgACGGCG------AGCG------------CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 144273 0.66 0.771674
Target:  5'- uGUCUgcugggcgagcacGGCgacucgcuGCUGCCGCaCGCGCUgCGGu -3'
miRNA:   3'- gCAGA-------------CCG--------CGACGGCGaGCGCGA-GCU- -5'
14627 3' -61.4 NC_003521.1 + 143448 0.69 0.642489
Target:  5'- gGUCUGGcCGCUcGaCCGCcagcgCGUGCUCa- -3'
miRNA:   3'- gCAGACC-GCGA-C-GGCGa----GCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 139321 0.69 0.632914
Target:  5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3'
miRNA:   3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 137686 0.68 0.690117
Target:  5'- cCGcCUGGUGCUGCagcacCGCcgCGCGCUgCGc -3'
miRNA:   3'- -GCaGACCGCGACG-----GCGa-GCGCGA-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.