miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 174449 0.67 0.718243
Target:  5'- aCGcgCUGGUGUcGCUGCUCGcCGC-CGGc -3'
miRNA:   3'- -GCa-GACCGCGaCGGCGAGC-GCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 32876 0.67 0.740337
Target:  5'- gGUUUGGCGCccgcgccgccggugcUGCCGC-CGUGCcCGc -3'
miRNA:   3'- gCAGACCGCG---------------ACGGCGaGCGCGaGCu -5'
14627 3' -61.4 NC_003521.1 + 137302 0.67 0.736685
Target:  5'- gCGggUGGCGCgGCUGCU-GCGCggCGAc -3'
miRNA:   3'- -GCagACCGCGaCGGCGAgCGCGa-GCU- -5'
14627 3' -61.4 NC_003521.1 + 19078 0.67 0.736685
Target:  5'- aCG-CUGaCGCUGUCGUUC-CGCUUGAu -3'
miRNA:   3'- -GCaGACcGCGACGGCGAGcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 169862 0.67 0.705177
Target:  5'- cCGUC-GGCGUggcuccguccggaGCCGCUC-CGCUCGc -3'
miRNA:   3'- -GCAGaCCGCGa------------CGGCGAGcGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 89181 0.67 0.718243
Target:  5'- gGcCUGGCcCUGCUGgaCGUGCUCa- -3'
miRNA:   3'- gCaGACCGcGACGGCgaGCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 28977 0.67 0.754807
Target:  5'- gCGaUCgUGGuCGCUGCCGUaCGCGaaCGAg -3'
miRNA:   3'- -GC-AG-ACC-GCGACGGCGaGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 99010 0.67 0.754807
Target:  5'- --aCUGGUGCUGuuGC---CGCUCGAg -3'
miRNA:   3'- gcaGACCGCGACggCGagcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 231242 0.67 0.73577
Target:  5'- -aUCUGGCGguaugguauUUGCCGCUCGUauuacagGCUgGAa -3'
miRNA:   3'- gcAGACCGC---------GACGGCGAGCG-------CGAgCU- -5'
14627 3' -61.4 NC_003521.1 + 169765 0.68 0.652056
Target:  5'- aCGUCggcccaUGGCGCcG-CGCUUuggGCGCUCGAg -3'
miRNA:   3'- -GCAG------ACCGCGaCgGCGAG---CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 132041 0.68 0.699544
Target:  5'- -cUgUGGUgGCUGCUGC-CGCGcCUCGAg -3'
miRNA:   3'- gcAgACCG-CGACGGCGaGCGC-GAGCU- -5'
14627 3' -61.4 NC_003521.1 + 84453 0.68 0.690117
Target:  5'- gGUCaGGCGCUGCaggaGaCgguaGCGCUUGAg -3'
miRNA:   3'- gCAGaCCGCGACGg---C-Gag--CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 162013 0.68 0.680647
Target:  5'- aCGaCUGGCGCcaccaggGCCGCUCGuCGaccugCGAc -3'
miRNA:   3'- -GCaGACCGCGa------CGGCGAGC-GCga---GCU- -5'
14627 3' -61.4 NC_003521.1 + 226862 0.68 0.671142
Target:  5'- aGUCacgGGCGCgguacuUGUCGC-CGUGCUCGu -3'
miRNA:   3'- gCAGa--CCGCG------ACGGCGaGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 180653 0.68 0.652056
Target:  5'- uGUCUguagcggcuccaGGCGUUGgCGCgaggccugCGUGCUCGAc -3'
miRNA:   3'- gCAGA------------CCGCGACgGCGa-------GCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 137618 0.68 0.699544
Target:  5'- gCG-CUGGaCGCcuaCCGCUCGCGCaUCGc -3'
miRNA:   3'- -GCaGACC-GCGac-GGCGAGCGCG-AGCu -5'
14627 3' -61.4 NC_003521.1 + 184656 0.68 0.661609
Target:  5'- uGUC--GCGCUGCgUGUUCGCGCgcagCGAg -3'
miRNA:   3'- gCAGacCGCGACG-GCGAGCGCGa---GCU- -5'
14627 3' -61.4 NC_003521.1 + 137686 0.68 0.690117
Target:  5'- cCGcCUGGUGCUGCagcacCGCcgCGCGCUgCGc -3'
miRNA:   3'- -GCaGACCGCGACG-----GCGa-GCGCGA-GCu -5'
14627 3' -61.4 NC_003521.1 + 110293 0.69 0.632914
Target:  5'- gGUCUGGCGCaGCacgaaGUugUCGCGCUgGu -3'
miRNA:   3'- gCAGACCGCGaCGg----CG--AGCGCGAgCu -5'
14627 3' -61.4 NC_003521.1 + 14388 0.69 0.594674
Target:  5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3'
miRNA:   3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.