Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 198762 | 0.7 | 0.547451 |
Target: 5'- uCG-CUGGuCGC-GCCGCUCGUGggCGAg -3' miRNA: 3'- -GCaGACC-GCGaCGGCGAGCGCgaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 225756 | 0.7 | 0.575675 |
Target: 5'- aGUgCUGuuGCagcacgcGCCGCUCGCGCUCGc -3' miRNA: 3'- gCA-GACcgCGa------CGGCGAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 56137 | 0.7 | 0.575675 |
Target: 5'- aCGUCgGGCGagUGCgGCUCGUGCUg-- -3' miRNA: 3'- -GCAGaCCGCg-ACGgCGAGCGCGAgcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 214827 | 0.69 | 0.593722 |
Target: 5'- gGUCUgcGGCGCUGCgGCUucaucacCGUGCcCGAc -3' miRNA: 3'- gCAGA--CCGCGACGgCGA-------GCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 14388 | 0.69 | 0.594674 |
Target: 5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3' miRNA: 3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 167591 | 0.69 | 0.604213 |
Target: 5'- uGUCgauggagagcGGCGCgcagaggcGCCGCagGCGCUCGGg -3' miRNA: 3'- gCAGa---------CCGCGa-------CGGCGagCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 165794 | 0.69 | 0.623339 |
Target: 5'- cCG-CUGGCGCUGCCG-UCGCaGUagGGg -3' miRNA: 3'- -GCaGACCGCGACGGCgAGCG-CGagCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 97276 | 0.69 | 0.623339 |
Target: 5'- ---aUGGCgGCUGCUGCUCGuCGC-CGGc -3' miRNA: 3'- gcagACCG-CGACGGCGAGC-GCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 139321 | 0.69 | 0.632914 |
Target: 5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3' miRNA: 3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 22739 | 0.69 | 0.632914 |
Target: 5'- uCGUCaccGGCGCcGCCGcCUCGCuguGCUuCGAg -3' miRNA: 3'- -GCAGa--CCGCGaCGGC-GAGCG---CGA-GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 110293 | 0.69 | 0.632914 |
Target: 5'- gGUCUGGCGCaGCacgaaGUugUCGCGCUgGu -3' miRNA: 3'- gCAGACCGCGaCGg----CG--AGCGCGAgCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 196144 | 0.69 | 0.632914 |
Target: 5'- cCGcugCUGGCGCUGCCGUUCucauGUgGCUCc- -3' miRNA: 3'- -GCa--GACCGCGACGGCGAG----CG-CGAGcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 120903 | 0.69 | 0.632914 |
Target: 5'- gGUCgGGgGCgGCUGCUUGCGUUUGc -3' miRNA: 3'- gCAGaCCgCGaCGGCGAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 25623 | 0.69 | 0.632914 |
Target: 5'- cCGggCUGGCGCUGCUGg-CGCGUgaccaCGAc -3' miRNA: 3'- -GCa-GACCGCGACGGCgaGCGCGa----GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 36794 | 0.69 | 0.642489 |
Target: 5'- aCGcgCU-GCGgaGCCGCUCGCGgaCGGc -3' miRNA: 3'- -GCa-GAcCGCgaCGGCGAGCGCgaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 143448 | 0.69 | 0.642489 |
Target: 5'- gGUCUGGcCGCUcGaCCGCcagcgCGUGCUCa- -3' miRNA: 3'- gCAGACC-GCGA-C-GGCGa----GCGCGAGcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 169765 | 0.68 | 0.652056 |
Target: 5'- aCGUCggcccaUGGCGCcG-CGCUUuggGCGCUCGAg -3' miRNA: 3'- -GCAG------ACCGCGaCgGCGAG---CGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 180653 | 0.68 | 0.652056 |
Target: 5'- uGUCUguagcggcuccaGGCGUUGgCGCgaggccugCGUGCUCGAc -3' miRNA: 3'- gCAGA------------CCGCGACgGCGa-------GCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 184656 | 0.68 | 0.661609 |
Target: 5'- uGUC--GCGCUGCgUGUUCGCGCgcagCGAg -3' miRNA: 3'- gCAGacCGCGACG-GCGAGCGCGa---GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 226862 | 0.68 | 0.671142 |
Target: 5'- aGUCacgGGCGCgguacuUGUCGC-CGUGCUCGu -3' miRNA: 3'- gCAGa--CCGCG------ACGGCGaGCGCGAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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