miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 231242 0.67 0.73577
Target:  5'- -aUCUGGCGguaugguauUUGCCGCUCGUauuacagGCUgGAa -3'
miRNA:   3'- gcAGACCGC---------GACGGCGAGCG-------CGAgCU- -5'
14627 3' -61.4 NC_003521.1 + 227363 0.77 0.249705
Target:  5'- cCGUCgacGGCGCUaccGCCGCU-GCGCUUGAc -3'
miRNA:   3'- -GCAGa--CCGCGA---CGGCGAgCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 226862 0.68 0.671142
Target:  5'- aGUCacgGGCGCgguacuUGUCGC-CGUGCUCGu -3'
miRNA:   3'- gCAGa--CCGCG------ACGGCGaGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 225891 1.08 0.001793
Target:  5'- gCGUCUGGCGCUGCCGCUCGCGCUCGAa -3'
miRNA:   3'- -GCAGACCGCGACGGCGAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 225756 0.7 0.575675
Target:  5'- aGUgCUGuuGCagcacgcGCCGCUCGCGCUCGc -3'
miRNA:   3'- gCA-GACcgCGa------CGGCGAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 225581 0.79 0.168531
Target:  5'- uCGUcCUGGCGCUcgGCgGcCUCGCGCUCGGc -3'
miRNA:   3'- -GCA-GACCGCGA--CGgC-GAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 223780 0.73 0.407133
Target:  5'- gCGcugCUGGUGCUGCCGUugUCGuCGCUCc- -3'
miRNA:   3'- -GCa--GACCGCGACGGCG--AGC-GCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 221766 0.66 0.789002
Target:  5'- gCGUCUGcgccGCGCcGCCGUccUCGaagcuccagcgucCGCUCGAu -3'
miRNA:   3'- -GCAGAC----CGCGaCGGCG--AGC-------------GCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 214827 0.69 0.593722
Target:  5'- gGUCUgcGGCGCUGCgGCUucaucacCGUGCcCGAc -3'
miRNA:   3'- gCAGA--CCGCGACGgCGA-------GCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 212420 0.66 0.806664
Target:  5'- uGUCggaGGCGUUGaucuggcgaCaCUCGUGCUCGAa -3'
miRNA:   3'- gCAGa--CCGCGACg--------GcGAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 209528 0.66 0.806664
Target:  5'- cCGUCgc-CGCUGCCGCgguuaUGCGCcCGGc -3'
miRNA:   3'- -GCAGaccGCGACGGCGa----GCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 206309 0.72 0.457276
Target:  5'- gCGUCUcGGCccGCgGCCGCUaccUGCGCUCGc -3'
miRNA:   3'- -GCAGA-CCG--CGaCGGCGA---GCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 198762 0.7 0.547451
Target:  5'- uCG-CUGGuCGC-GCCGCUCGUGggCGAg -3'
miRNA:   3'- -GCaGACC-GCGaCGGCGAGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 197851 0.74 0.331671
Target:  5'- uCGUCggugGGCGCcgGCgGgUCGCGCUCGc -3'
miRNA:   3'- -GCAGa---CCGCGa-CGgCgAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 197577 0.66 0.772551
Target:  5'- uCGggagCUGGCGCUGCUaCUCGCcCUUc- -3'
miRNA:   3'- -GCa---GACCGCGACGGcGAGCGcGAGcu -5'
14627 3' -61.4 NC_003521.1 + 196144 0.69 0.632914
Target:  5'- cCGcugCUGGCGCUGCCGUUCucauGUgGCUCc- -3'
miRNA:   3'- -GCa--GACCGCGACGGCGAG----CG-CGAGcu -5'
14627 3' -61.4 NC_003521.1 + 195856 0.7 0.538137
Target:  5'- gCGUCa-GCGCUGUCGcCUCGCuCUCGGg -3'
miRNA:   3'- -GCAGacCGCGACGGC-GAGCGcGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 185077 0.73 0.407133
Target:  5'- gCGcCUGuCGCUGCCGCccgCGCGCUgGGa -3'
miRNA:   3'- -GCaGACcGCGACGGCGa--GCGCGAgCU- -5'
14627 3' -61.4 NC_003521.1 + 184656 0.68 0.661609
Target:  5'- uGUC--GCGCUGCgUGUUCGCGCgcagCGAg -3'
miRNA:   3'- gCAGacCGCGACG-GCGAGCGCGa---GCU- -5'
14627 3' -61.4 NC_003521.1 + 181335 0.66 0.805836
Target:  5'- cCGUCUGGUucuguaGCUGCaGCgugauugUCGCGCcCGGa -3'
miRNA:   3'- -GCAGACCG------CGACGgCG-------AGCGCGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.