Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14629 | 5' | -49.4 | NC_003521.1 | + | 239348 | 0.71 | 0.944012 |
Target: 5'- cGUCCGGGCguCUGcAGCGGg- -3' miRNA: 3'- cCAGGCUCGguGAC-UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 227094 | 1.02 | 0.032326 |
Target: 5'- cGGUCCGAGCCACUGAGCGGUUc -3' miRNA: 3'- -CCAGGCUCGGUGACUCGCCAA- -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 217881 | 0.66 | 0.996649 |
Target: 5'- --cCCGAGCCAuCUcAGCGGUc -3' miRNA: 3'- ccaGGCUCGGU-GAcUCGCCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 209522 | 0.66 | 0.997177 |
Target: 5'- cGGUgaCCGucGCCGCUGccGCGGUUa -3' miRNA: 3'- -CCA--GGCu-CGGUGACu-CGCCAA- -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 196391 | 0.68 | 0.985552 |
Target: 5'- --gCCGAGCCGCcgucacgaUGGGCGGg- -3' miRNA: 3'- ccaGGCUCGGUG--------ACUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 189278 | 0.67 | 0.994559 |
Target: 5'- -cUCCGAGCCACcaaGAuGCGGa- -3' miRNA: 3'- ccAGGCUCGGUGa--CU-CGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 177990 | 0.67 | 0.995349 |
Target: 5'- --gCCGGGUCAgaGAGCGGg- -3' miRNA: 3'- ccaGGCUCGGUgaCUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 173650 | 0.72 | 0.910463 |
Target: 5'- uGGUUCGGGCgGCUGcGCGGg- -3' miRNA: 3'- -CCAGGCUCGgUGACuCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 155441 | 0.66 | 0.997634 |
Target: 5'- uGG-CCGAcCCGCUGGGCGaGUc -3' miRNA: 3'- -CCaGGCUcGGUGACUCGC-CAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 151103 | 0.67 | 0.992655 |
Target: 5'- gGGU-CGGGCCGCUGggggauGGCGGg- -3' miRNA: 3'- -CCAgGCUCGGUGAC------UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 141082 | 0.66 | 0.997634 |
Target: 5'- --gCCGGGCCAaaUGAGCGGc- -3' miRNA: 3'- ccaGGCUCGGUg-ACUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 129230 | 0.66 | 0.996649 |
Target: 5'- aGUCCGGcGCCGCUGGccacgcGCGGc- -3' miRNA: 3'- cCAGGCU-CGGUGACU------CGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 128391 | 0.7 | 0.957173 |
Target: 5'- cGcCUGGGCCGcCUGAGCGGg- -3' miRNA: 3'- cCaGGCUCGGU-GACUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 127829 | 0.69 | 0.984431 |
Target: 5'- aGGUgcCCGGgugguaguggcgcccGCCGCUGAGCGGc- -3' miRNA: 3'- -CCA--GGCU---------------CGGUGACUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 125327 | 0.71 | 0.939096 |
Target: 5'- gGGUCCG-GCCACaGAGCGa-- -3' miRNA: 3'- -CCAGGCuCGGUGaCUCGCcaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 121004 | 0.67 | 0.993374 |
Target: 5'- aGUCgGAGCCGCUGcuccagaccuccucGGCGGc- -3' miRNA: 3'- cCAGgCUCGGUGAC--------------UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 113901 | 0.69 | 0.979282 |
Target: 5'- aGGUaggCGAGCUGCUGAGCGa-- -3' miRNA: 3'- -CCAg--GCUCGGUGACUCGCcaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 113392 | 0.66 | 0.996649 |
Target: 5'- uGGccgaCGAGCCGCUG-GCGGc- -3' miRNA: 3'- -CCag--GCUCGGUGACuCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 107782 | 0.67 | 0.994559 |
Target: 5'- --gCUGAGCCACUGuGGUGGg- -3' miRNA: 3'- ccaGGCUCGGUGAC-UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 98531 | 0.72 | 0.916731 |
Target: 5'- cGG-CUGGGCCGCUGcAGCGGc- -3' miRNA: 3'- -CCaGGCUCGGUGAC-UCGCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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