miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 3' -59.6 NC_003521.1 + 228215 1.06 0.003177
Target:  5'- uUCCACGGCCCCGAAGCGAUCCCAGAAg -3'
miRNA:   3'- -AGGUGCCGGGGCUUCGCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 233432 0.75 0.366483
Target:  5'- cUCCgACGGCCUCGAcGCGGUCCCu--- -3'
miRNA:   3'- -AGG-UGCCGGGGCUuCGCUAGGGucuu -5'
14630 3' -59.6 NC_003521.1 + 178983 0.73 0.448608
Target:  5'- gCCGCGGUUCCGcGGCGcccUCCCAGGg -3'
miRNA:   3'- aGGUGCCGGGGCuUCGCu--AGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 64092 0.72 0.50249
Target:  5'- gCC-CGGCCUgGAGGCGGgcUUCCAGAAc -3'
miRNA:   3'- aGGuGCCGGGgCUUCGCU--AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 147506 0.71 0.559009
Target:  5'- -aCACGGCCCCGAAGCa---CCAGc- -3'
miRNA:   3'- agGUGCCGGGGCUUCGcuagGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 178719 0.71 0.57827
Target:  5'- cCCGCgcgGGCgCCGAAGCGuUCCCGGu- -3'
miRNA:   3'- aGGUG---CCGgGGCUUCGCuAGGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 112450 0.71 0.587956
Target:  5'- cCCagGCGGCCCUGGugGGCGcgCCCGGc- -3'
miRNA:   3'- aGG--UGCCGGGGCU--UCGCuaGGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 144124 0.7 0.60741
Target:  5'- gCCGCGGCCUggaCGAGGUGcgCCUGGGc -3'
miRNA:   3'- aGGUGCCGGG---GCUUCGCuaGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 120552 0.7 0.617165
Target:  5'- cCgGCGGUCCCGggG-GAgcgCCCGGGGa -3'
miRNA:   3'- aGgUGCCGGGGCuuCgCUa--GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 42815 0.7 0.626931
Target:  5'- gCCACGGuCCCCGAacgcaacuguGGCGuaugcuacCCCGGGAa -3'
miRNA:   3'- aGGUGCC-GGGGCU----------UCGCua------GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 203627 0.7 0.6367
Target:  5'- aCCGCGGUCCCccGGCuccuccUCCCAGAAa -3'
miRNA:   3'- aGGUGCCGGGGcuUCGcu----AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 166678 0.69 0.656222
Target:  5'- aCCugGGCCCCGuGGCGcgCCa---- -3'
miRNA:   3'- aGGugCCGGGGCuUCGCuaGGgucuu -5'
14630 3' -59.6 NC_003521.1 + 29939 0.69 0.656222
Target:  5'- -gCACGGCCaCCGAGGCGAcguacaCCCuGGg -3'
miRNA:   3'- agGUGCCGG-GGCUUCGCUa-----GGGuCUu -5'
14630 3' -59.6 NC_003521.1 + 105056 0.69 0.665959
Target:  5'- -gCGCGagcaGCCCCaGggGCGAUCCCAc-- -3'
miRNA:   3'- agGUGC----CGGGG-CuuCGCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 234211 0.69 0.675673
Target:  5'- -gCGCGGCCuCCGAAGaCGGUUCCGu-- -3'
miRNA:   3'- agGUGCCGG-GGCUUC-GCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 240548 0.69 0.675673
Target:  5'- cUCCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3'
miRNA:   3'- -AGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 40321 0.69 0.675673
Target:  5'- cUCCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3'
miRNA:   3'- -AGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 175120 0.69 0.685353
Target:  5'- gCCGCGGCgCCGcuGUccuucuugccuGGUCCCGGAAg -3'
miRNA:   3'- aGGUGCCGgGGCuuCG-----------CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 163962 0.69 0.685353
Target:  5'- gCCGCGGaCgCCGAagauGGCGGUCgCCGGGc -3'
miRNA:   3'- aGGUGCC-GgGGCU----UCGCUAG-GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 74186 0.69 0.694994
Target:  5'- gCCGCGGCgCCCGgcGCGcggCCCGa-- -3'
miRNA:   3'- aGGUGCCG-GGGCuuCGCua-GGGUcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.