miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 114174 0.68 0.858858
Target:  5'- aCUCGgaccCGGugAucgGCUCGGGCAUCa -3'
miRNA:   3'- aGAGUac--GCCugUug-CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 15741 0.68 0.85133
Target:  5'- gUUCcUGCaGGu--GCGCCCGGGCAg- -3'
miRNA:   3'- aGAGuACG-CCuguUGCGGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 197660 0.7 0.766966
Target:  5'- gCUCGUGCGGcaGCAGCGCCaccaGcGCGUg -3'
miRNA:   3'- aGAGUACGCC--UGUUGCGGg---CcCGUAg -5'
14630 5' -57.2 NC_003521.1 + 113548 0.72 0.671461
Target:  5'- --gCGUGuCGGACGugccGCGCCUGGGCGc- -3'
miRNA:   3'- agaGUAC-GCCUGU----UGCGGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 173038 0.66 0.917436
Target:  5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3'
miRNA:   3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 169436 0.67 0.886999
Target:  5'- gCUCAcGCGGACGACGgCgucggcggcggCGGGUucGUCg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCgG-----------GCCCG--UAG- -5'
14630 5' -57.2 NC_003521.1 + 12548 0.69 0.825208
Target:  5'- --cCGUGgaGGACGccgagcgucuggagAUGCCCGGGCGUUg -3'
miRNA:   3'- agaGUACg-CCUGU--------------UGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 164829 0.72 0.622071
Target:  5'- uUCUaCGUGCuGACGGCGCCCggcgaGGGCcgCu -3'
miRNA:   3'- -AGA-GUACGcCUGUUGCGGG-----CCCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 16485 0.67 0.886336
Target:  5'- gUCUaCGUGCGG-CGACGCUacgagcaCGGGCu-- -3'
miRNA:   3'- -AGA-GUACGCCuGUUGCGG-------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 102947 0.72 0.622071
Target:  5'- --gCGUcGCGGuccaGGCGCUCGGGCGUCg -3'
miRNA:   3'- agaGUA-CGCCug--UUGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 34283 0.69 0.82766
Target:  5'- -gUCAcGgGGGCGG-GCCaCGGGCGUCa -3'
miRNA:   3'- agAGUaCgCCUGUUgCGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 37388 0.68 0.866193
Target:  5'- gUUCGagGCGGcgGgGGCGCCCGGGCcUUg -3'
miRNA:   3'- aGAGUa-CGCC--UgUUGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 13866 0.69 0.791178
Target:  5'- gUCUC-UGCGGGCGGCGCcgccauggauuucgCCGGGgGg- -3'
miRNA:   3'- -AGAGuACGCCUGUUGCG--------------GGCCCgUag -5'
14630 5' -57.2 NC_003521.1 + 155277 0.7 0.766966
Target:  5'- cCUCAggcccgucGCuGGGCAACGCCaUGGGCuUCg -3'
miRNA:   3'- aGAGUa-------CG-CCUGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 72576 0.71 0.710476
Target:  5'- cCUCGUGCGG-CAACGCguuCCaGGCGcUCa -3'
miRNA:   3'- aGAGUACGCCuGUUGCG---GGcCCGU-AG- -5'
14630 5' -57.2 NC_003521.1 + 198261 0.72 0.671461
Target:  5'- aCUCGgccGcCGGACAGCcagCCGGGCGUCg -3'
miRNA:   3'- aGAGUa--C-GCCUGUUGcg-GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 166704 0.66 0.922862
Target:  5'- -gUCcUGC--ACGGCGCCCauGGGCGUCg -3'
miRNA:   3'- agAGuACGccUGUUGCGGG--CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 170864 0.66 0.917436
Target:  5'- uUCUCcgcggggGCGGGCGcggguggucagGCGUCCG-GCGUCg -3'
miRNA:   3'- -AGAGua-----CGCCUGU-----------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 135042 0.67 0.89352
Target:  5'- -gUCAcgGUGGuuAACGCCuCGGGCAc- -3'
miRNA:   3'- agAGUa-CGCCugUUGCGG-GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 89249 0.67 0.886999
Target:  5'- aUCgggCGUGCuGACGcggugacacgagACGCCCGcGCGUCa -3'
miRNA:   3'- -AGa--GUACGcCUGU------------UGCGGGCcCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.