Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 104846 | 0.74 | 0.518906 |
Target: 5'- cCUCGgugaaggcguUGUGGACGugccucaugucgcagGCGCCCGaGGCGUCg -3' miRNA: 3'- aGAGU----------ACGCCUGU---------------UGCGGGC-CCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 12548 | 0.69 | 0.825208 |
Target: 5'- --cCGUGgaGGACGccgagcgucuggagAUGCCCGGGCGUUg -3' miRNA: 3'- agaGUACg-CCUGU--------------UGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 15741 | 0.68 | 0.85133 |
Target: 5'- gUUCcUGCaGGu--GCGCCCGGGCAg- -3' miRNA: 3'- aGAGuACG-CCuguUGCGGGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 195746 | 0.66 | 0.937803 |
Target: 5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3' miRNA: 3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 198261 | 0.72 | 0.671461 |
Target: 5'- aCUCGgccGcCGGACAGCcagCCGGGCGUCg -3' miRNA: 3'- aGAGUa--C-GCCUGUUGcg-GGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 36809 | 0.71 | 0.69106 |
Target: 5'- gCUC--GCGGACGGCGgaCUCGGGCAUg -3' miRNA: 3'- aGAGuaCGCCUGUUGC--GGGCCCGUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 72576 | 0.71 | 0.710476 |
Target: 5'- cCUCGUGCGG-CAACGCguuCCaGGCGcUCa -3' miRNA: 3'- aGAGUACGCCuGUUGCG---GGcCCGU-AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 12237 | 0.71 | 0.720095 |
Target: 5'- gCUC-UGCGGGC-ACGCCgacaaccucaaGGGCGUCu -3' miRNA: 3'- aGAGuACGCCUGuUGCGGg----------CCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 155277 | 0.7 | 0.766966 |
Target: 5'- cCUCAggcccgucGCuGGGCAACGCCaUGGGCuUCg -3' miRNA: 3'- aGAGUa-------CG-CCUGUUGCGG-GCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 195846 | 0.69 | 0.819429 |
Target: 5'- aUCUCGcGCGG-CAGgGUUCGGGgAUCg -3' miRNA: 3'- -AGAGUaCGCCuGUUgCGGGCCCgUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 218199 | 0.69 | 0.784988 |
Target: 5'- -aUgGUGCGGugGGUGuCCCGGGCAa- -3' miRNA: 3'- agAgUACGCCugUUGC-GGGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 197660 | 0.7 | 0.766966 |
Target: 5'- gCUCGUGCGGcaGCAGCGCCaccaGcGCGUg -3' miRNA: 3'- aGAGUACGCC--UGUUGCGGg---CcCGUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 102947 | 0.72 | 0.622071 |
Target: 5'- --gCGUcGCGGuccaGGCGCUCGGGCGUCg -3' miRNA: 3'- agaGUA-CGCCug--UUGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 13866 | 0.69 | 0.791178 |
Target: 5'- gUCUC-UGCGGGCGGCGCcgccauggauuucgCCGGGgGg- -3' miRNA: 3'- -AGAGuACGCCUGUUGCG--------------GGCCCgUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 164829 | 0.72 | 0.622071 |
Target: 5'- uUCUaCGUGCuGACGGCGCCCggcgaGGGCcgCu -3' miRNA: 3'- -AGA-GUACGcCUGUUGCGGG-----CCCGuaG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 177731 | 0.7 | 0.729644 |
Target: 5'- gCUgGaggGCGGGCAGCGCgCCGGcGCAg- -3' miRNA: 3'- aGAgUa--CGCCUGUUGCG-GGCC-CGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 223204 | 0.69 | 0.792934 |
Target: 5'- cCUCccaGCGGguucguauacgccGCGACGCCUGGcGCGUCc -3' miRNA: 3'- aGAGua-CGCC-------------UGUUGCGGGCC-CGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 34283 | 0.69 | 0.82766 |
Target: 5'- -gUCAcGgGGGCGG-GCCaCGGGCGUCa -3' miRNA: 3'- agAGUaCgCCUGUUgCGG-GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 113548 | 0.72 | 0.671461 |
Target: 5'- --gCGUGuCGGACGugccGCGCCUGGGCGc- -3' miRNA: 3'- agaGUAC-GCCUGU----UGCGGGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 1835 | 0.71 | 0.709511 |
Target: 5'- cCUCAgcaugGCGGACGACagaccgggacgggGCCCGGcGCcUCu -3' miRNA: 3'- aGAGUa----CGCCUGUUG-------------CGGGCC-CGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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