miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 122732 0.66 0.930085
Target:  5'- -gUCGUGgGcGACGGCGCcgccgauggcugacaCCGGGCAc- -3'
miRNA:   3'- agAGUACgC-CUGUUGCG---------------GGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 16602 0.68 0.858858
Target:  5'- ---gGUGUGGACcGCGacuaCGGGCGUCa -3'
miRNA:   3'- agagUACGCCUGuUGCgg--GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 91916 0.66 0.933046
Target:  5'- gCUCgAUGcCGcGGCGGCGCUCcucGGCGUCg -3'
miRNA:   3'- aGAG-UAC-GC-CUGUUGCGGGc--CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 114174 0.68 0.858858
Target:  5'- aCUCGgaccCGGugAucgGCUCGGGCAUCa -3'
miRNA:   3'- aGAGUac--GCCugUug-CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 94862 0.66 0.922862
Target:  5'- gCUCAUagauguugagGCGGccCAGCaGCUCGGGCGUg -3'
miRNA:   3'- aGAGUA----------CGCCu-GUUG-CGGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 166704 0.66 0.922862
Target:  5'- -gUCcUGC--ACGGCGCCCauGGGCGUCg -3'
miRNA:   3'- agAGuACGccUGUUGCGGG--CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 138332 0.66 0.933046
Target:  5'- cCUgCGgcUGCGcGACGGCGUCuCGGGCcUCu -3'
miRNA:   3'- aGA-GU--ACGC-CUGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 170864 0.66 0.917436
Target:  5'- uUCUCcgcggggGCGGGCGcggguggucagGCGUCCG-GCGUCg -3'
miRNA:   3'- -AGAGua-----CGCCUGU-----------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 120543 0.66 0.931575
Target:  5'- cCUCG-GCGGcCGgcggucccgggggaGCGCCCGGGgAUa -3'
miRNA:   3'- aGAGUaCGCCuGU--------------UGCGGGCCCgUAg -5'
14630 5' -57.2 NC_003521.1 + 194156 0.7 0.748496
Target:  5'- cCUCG-GCGGGCGGuuccauCGCCCGGGUu-- -3'
miRNA:   3'- aGAGUaCGCCUGUU------GCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 135925 0.67 0.899826
Target:  5'- cCUCGgccacggccGCGGgauguGCGACGCCuCGGGCGc- -3'
miRNA:   3'- aGAGUa--------CGCC-----UGUUGCGG-GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 224081 0.69 0.819429
Target:  5'- cCUCcgGCGGGCGcgcGCGCCgGcGGUcgCc -3'
miRNA:   3'- aGAGuaCGCCUGU---UGCGGgC-CCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 130223 0.67 0.899826
Target:  5'- cCUCAUGgUGGAgAucggccGCGUgCUGGGCGUCa -3'
miRNA:   3'- aGAGUAC-GCCUgU------UGCG-GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 150431 0.67 0.89352
Target:  5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3'
miRNA:   3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 46065 0.67 0.89352
Target:  5'- --cCggGCGGgaugaggucGCGACGCCCG-GCGUCg -3'
miRNA:   3'- agaGuaCGCC---------UGUUGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 31618 0.67 0.882986
Target:  5'- -gUCAggugGCGGAUggccgguagguggaaAGCGCCCaGGUGUCg -3'
miRNA:   3'- agAGUa---CGCCUG---------------UUGCGGGcCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 73706 0.67 0.880268
Target:  5'- cUUCGUGgaGcGCAGCGaCCCGGGCcgCg -3'
miRNA:   3'- aGAGUACg-CcUGUUGC-GGGCCCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 119032 0.68 0.873332
Target:  5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3'
miRNA:   3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 178785 0.69 0.82766
Target:  5'- gUCUCGuuguUGCaGGACgGGCcCCCGGGCAccUCg -3'
miRNA:   3'- -AGAGU----ACG-CCUG-UUGcGGGCCCGU--AG- -5'
14630 5' -57.2 NC_003521.1 + 224798 0.69 0.819429
Target:  5'- -gUCGUGCGGgacgcGCGugGCguaGGGCGUCu -3'
miRNA:   3'- agAGUACGCC-----UGUugCGgg-CCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.