miRNA display CGI


Results 61 - 80 of 720 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 79 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 85716 0.66 0.852259
Target:  5'- -aGAa--GUCCuCCACGCCCugcuccugcAGCGCCg -3'
miRNA:   3'- cgCUgagCGGGuGGUGCGGG---------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 112940 0.66 0.837199
Target:  5'- --uACUaCGCCUACCGCGaCCCGcccgagauGCGCUa -3'
miRNA:   3'- cgcUGA-GCGGGUGGUGC-GGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 217239 0.66 0.821485
Target:  5'- uGCaGGCcagCaCCC-CCGCGCCCAcCACCa -3'
miRNA:   3'- -CG-CUGa--GcGGGuGGUGCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 71881 0.66 0.852259
Target:  5'- uGCGGCUCuCCCAgUA-GCUCAGCAg- -3'
miRNA:   3'- -CGCUGAGcGGGUgGUgCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 240628 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 69939 0.66 0.82942
Target:  5'- cGCGACgccggaCGCCUGaccacCCGCGCCC-GCcCCc -3'
miRNA:   3'- -CGCUGa-----GCGGGU-----GGUGCGGGuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 239464 0.66 0.837199
Target:  5'- aGCGG-UgGCCCGCgGCGCguUCAGCcCCa -3'
miRNA:   3'- -CGCUgAgCGGGUGgUGCG--GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 224614 0.66 0.858811
Target:  5'- gGCGGCaggGCgCCGCCACcucgaagGgCCAGCACUc -3'
miRNA:   3'- -CGCUGag-CG-GGUGGUG-------CgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 103931 0.66 0.852259
Target:  5'- aCGuCgUUGUCgACCGCGaacaCCGGCGCCa -3'
miRNA:   3'- cGCuG-AGCGGgUGGUGCg---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 184840 0.66 0.844814
Target:  5'- cGCuACUCGCgCCGCUGCGacugccgacCCCAGgCACa -3'
miRNA:   3'- -CGcUGAGCG-GGUGGUGC---------GGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 234757 0.66 0.844814
Target:  5'- aCGGCUgGCgUgAUCACGCCCuGCgggGCCg -3'
miRNA:   3'- cGCUGAgCG-GgUGGUGCGGGuCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 120926 0.66 0.844814
Target:  5'- uGCGGCU-GCCCGCgGCGgcggcUCCGGCGa- -3'
miRNA:   3'- -CGCUGAgCGGGUGgUGC-----GGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 166288 0.66 0.819074
Target:  5'- cGCGGCUgGUCCGCguggccucguugcgUACGgCCAGCAg- -3'
miRNA:   3'- -CGCUGAgCGGGUG--------------GUGCgGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 239854 0.66 0.820683
Target:  5'- aGCaGAC-CGCCgGCCucucguuGCGCCCAcuuGCGCa -3'
miRNA:   3'- -CG-CUGaGCGGgUGG-------UGCGGGU---CGUGg -5'
14631 5' -60.3 NC_003521.1 + 152947 0.66 0.855189
Target:  5'- -gGAuUUCGUCCACCuGCGCCUcgaucugcuccuccaGGCACUu -3'
miRNA:   3'- cgCU-GAGCGGGUGG-UGCGGG---------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111839 0.66 0.821485
Target:  5'- aGCGuggUGCCCAgCAuCGUcuuuuuCCAGCGCCa -3'
miRNA:   3'- -CGCugaGCGGGUgGU-GCG------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 148078 0.66 0.82942
Target:  5'- uCGACUgGUUCAggaccgugcUCugGuCCCGGCGCCa -3'
miRNA:   3'- cGCUGAgCGGGU---------GGugC-GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 153575 0.66 0.85953
Target:  5'- gGCGcACagcCGCuCCACCACcugcaGCagCAGCGCCa -3'
miRNA:   3'- -CGC-UGa--GCG-GGUGGUG-----CGg-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 116644 0.66 0.821485
Target:  5'- aGCGGCagcuaCGCCgGCCucuCGCucuCCAGcCGCCg -3'
miRNA:   3'- -CGCUGa----GCGGgUGGu--GCG---GGUC-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.