miRNA display CGI


Results 61 - 80 of 720 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 27215 0.66 0.85953
Target:  5'- gGCGAC-CGCCaccccaacaGCCugGUcaucgCCGGCugCu -3'
miRNA:   3'- -CGCUGaGCGGg--------UGGugCG-----GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 27702 0.75 0.366462
Target:  5'- uGCGGC-CGCaccaCGCCACaCCCAGCGCg -3'
miRNA:   3'- -CGCUGaGCGg---GUGGUGcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 27796 0.76 0.337194
Target:  5'- cCGGCcCGCUCgGCCGgcuCGCCCGGCGCCa -3'
miRNA:   3'- cGCUGaGCGGG-UGGU---GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 28108 0.67 0.813398
Target:  5'- gGCG-CUCGCCCAagauCgAgGCCCGaccCACCa -3'
miRNA:   3'- -CGCuGAGCGGGU----GgUgCGGGUc--GUGG- -5'
14631 5' -60.3 NC_003521.1 + 28151 0.7 0.602345
Target:  5'- gGCGACggCGgCgACCAUGCCCGcGaCGCCc -3'
miRNA:   3'- -CGCUGa-GCgGgUGGUGCGGGU-C-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 28757 0.72 0.490654
Target:  5'- cGCgGGC-CGCgCCACCGC-CCUAGCGCUg -3'
miRNA:   3'- -CG-CUGaGCG-GGUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 28798 0.7 0.650217
Target:  5'- cCGACaaGCCCgucACCgACGgCCAGUACCu -3'
miRNA:   3'- cGCUGagCGGG---UGG-UGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 28914 0.66 0.840265
Target:  5'- cGCGACuacaacgugcucuucUCuaugGCCacuaUACCACGCgCGGCGCCc -3'
miRNA:   3'- -CGCUG---------------AG----CGG----GUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29101 0.69 0.682639
Target:  5'- gGCGcACuuUCGCCgCACCauccGCGCgcugcgcugcuacauCCAGCACCa -3'
miRNA:   3'- -CGC-UG--AGCGG-GUGG----UGCG---------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29155 0.72 0.527023
Target:  5'- cGCGGCaacuUC-UCCGCCAaagGCCCGGUACCg -3'
miRNA:   3'- -CGCUG----AGcGGGUGGUg--CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29297 0.66 0.864513
Target:  5'- uGCGugUCGaCCUACgGCGCguauucuuuuauuuUCAGC-CCu -3'
miRNA:   3'- -CGCugAGC-GGGUGgUGCG--------------GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 29343 0.77 0.265682
Target:  5'- cCGACUaCGUgCGCUGCGCCCuGCGCCu -3'
miRNA:   3'- cGCUGA-GCGgGUGGUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29684 0.7 0.610949
Target:  5'- gGCGACUgGaggaugaUCCGCUGCGUCCucGGCGCCu -3'
miRNA:   3'- -CGCUGAgC-------GGGUGGUGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 30556 0.66 0.821485
Target:  5'- -gGACgCGCCgGCCACagaagGCCCGuccGCGCUa -3'
miRNA:   3'- cgCUGaGCGGgUGGUG-----CGGGU---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 30645 0.67 0.779679
Target:  5'- gGCGGCgCGCCUGCU-CGUCaUGGCGCCu -3'
miRNA:   3'- -CGCUGaGCGGGUGGuGCGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 31737 0.66 0.844814
Target:  5'- cGCGGCcacCGCCUccGCCGCcucgaCCGGCACa -3'
miRNA:   3'- -CGCUGa--GCGGG--UGGUGcg---GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 31880 0.71 0.592804
Target:  5'- aGCGguAC-CGCaCCGCCAgGCCgCGGCACa -3'
miRNA:   3'- -CGC--UGaGCG-GGUGGUgCGG-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 32073 0.79 0.211795
Target:  5'- aCGuACUgGCCCgugGCCACGgCCAGCGCCa -3'
miRNA:   3'- cGC-UGAgCGGG---UGGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 32901 0.69 0.707162
Target:  5'- uGCcGCcgUGCCCGCCGCcCCCggcguagguGGCGCCg -3'
miRNA:   3'- -CGcUGa-GCGGGUGGUGcGGG---------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 33327 0.66 0.844813
Target:  5'- --uGCUgGCaCCACC-CGCUgggCGGCACCg -3'
miRNA:   3'- cgcUGAgCG-GGUGGuGCGG---GUCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.