Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14632 | 3' | -47.1 | NC_003521.1 | + | 34478 | 0.66 | 0.99999 |
Target: 5'- uUUUCCcCUACGUAGG---GGAAAUCa -3' miRNA: 3'- uAGAGGaGGUGCAUCUcuuUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 104750 | 0.66 | 0.999987 |
Target: 5'- ---cCCUCCAgCGUGGAGAu-GAGcgCg -3' miRNA: 3'- uagaGGAGGU-GCAUCUCUuuCUUuaG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 98296 | 0.66 | 0.999987 |
Target: 5'- -aCUCCUCaGgGaAGAGGAGGAAGUg -3' miRNA: 3'- uaGAGGAGgUgCaUCUCUUUCUUUAg -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 104222 | 0.66 | 0.999987 |
Target: 5'- -cCUCCUCgCACG-AGAGugccGAGuGAUCg -3' miRNA: 3'- uaGAGGAG-GUGCaUCUCu---UUCuUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 174104 | 0.66 | 0.999982 |
Target: 5'- --gUCCUCCACacUAGGGGAgcagacccucaGGggGUCg -3' miRNA: 3'- uagAGGAGGUGc-AUCUCUU-----------UCuuUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 2086 | 0.66 | 0.999982 |
Target: 5'- aAUgUUCUCaCGCGagaAGAGAGAGAAAUg -3' miRNA: 3'- -UAgAGGAG-GUGCa--UCUCUUUCUUUAg -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 96012 | 0.66 | 0.999982 |
Target: 5'- ---cCCUCCugGUGcAGGAGGAAAg- -3' miRNA: 3'- uagaGGAGGugCAUcUCUUUCUUUag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 67687 | 0.66 | 0.999966 |
Target: 5'- gAUCUCCgauaGCGaGGAGGAAGAGGg- -3' miRNA: 3'- -UAGAGGagg-UGCaUCUCUUUCUUUag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 86243 | 0.66 | 0.999966 |
Target: 5'- -gCUCCUUgACGUGcAGGgcGAAGUCg -3' miRNA: 3'- uaGAGGAGgUGCAUcUCUuuCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 221747 | 0.67 | 0.999939 |
Target: 5'- -cCUCCUCCucACGgcccagcugGGAGGAcGGGAUCu -3' miRNA: 3'- uaGAGGAGG--UGCa--------UCUCUUuCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 80289 | 0.67 | 0.99992 |
Target: 5'- cGUCUCuguCUCCGCGUAcGAGGAGGc---- -3' miRNA: 3'- -UAGAG---GAGGUGCAU-CUCUUUCuuuag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 147041 | 0.67 | 0.999895 |
Target: 5'- cUUUCgCUCUGCGaccccGGGGGAGGGAGUCg -3' miRNA: 3'- uAGAG-GAGGUGCa----UCUCUUUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 140703 | 0.67 | 0.999895 |
Target: 5'- aAUUUCCUCCugGU-GAGAAcGucAUCc -3' miRNA: 3'- -UAGAGGAGGugCAuCUCUUuCuuUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 13054 | 0.68 | 0.999824 |
Target: 5'- -aCUCCUCCGac--GAGGAAGAGAa- -3' miRNA: 3'- uaGAGGAGGUgcauCUCUUUCUUUag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 103164 | 0.68 | 0.999712 |
Target: 5'- ---gUCUCCACGUagucguGGAGAAAGuuGUCc -3' miRNA: 3'- uagaGGAGGUGCA------UCUCUUUCuuUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 172715 | 0.69 | 0.999431 |
Target: 5'- cGUCUCCgUCCACGUcuuGGAGAccagcggguuGAGGuugaGAUCc -3' miRNA: 3'- -UAGAGG-AGGUGCA---UCUCU----------UUCU----UUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 11902 | 0.69 | 0.999431 |
Target: 5'- -cUUUCUCUACGUGGA---GGAGAUCg -3' miRNA: 3'- uaGAGGAGGUGCAUCUcuuUCUUUAG- -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 187103 | 0.69 | 0.999295 |
Target: 5'- cUCcCCUCCGCGcgAGAGAuuGAAGa- -3' miRNA: 3'- uAGaGGAGGUGCa-UCUCUuuCUUUag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 120519 | 0.69 | 0.999132 |
Target: 5'- gAUCUCCUUCGCccGGGGAAGGGc--- -3' miRNA: 3'- -UAGAGGAGGUGcaUCUCUUUCUuuag -5' |
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14632 | 3' | -47.1 | NC_003521.1 | + | 81701 | 0.7 | 0.998706 |
Target: 5'- cUCaUCUUCCACGUcccaGGAGAGcacGGAGUCg -3' miRNA: 3'- uAG-AGGAGGUGCA----UCUCUUu--CUUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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