miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14632 3' -47.1 NC_003521.1 + 34478 0.66 0.99999
Target:  5'- uUUUCCcCUACGUAGG---GGAAAUCa -3'
miRNA:   3'- uAGAGGaGGUGCAUCUcuuUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 104750 0.66 0.999987
Target:  5'- ---cCCUCCAgCGUGGAGAu-GAGcgCg -3'
miRNA:   3'- uagaGGAGGU-GCAUCUCUuuCUUuaG- -5'
14632 3' -47.1 NC_003521.1 + 98296 0.66 0.999987
Target:  5'- -aCUCCUCaGgGaAGAGGAGGAAGUg -3'
miRNA:   3'- uaGAGGAGgUgCaUCUCUUUCUUUAg -5'
14632 3' -47.1 NC_003521.1 + 104222 0.66 0.999987
Target:  5'- -cCUCCUCgCACG-AGAGugccGAGuGAUCg -3'
miRNA:   3'- uaGAGGAG-GUGCaUCUCu---UUCuUUAG- -5'
14632 3' -47.1 NC_003521.1 + 174104 0.66 0.999982
Target:  5'- --gUCCUCCACacUAGGGGAgcagacccucaGGggGUCg -3'
miRNA:   3'- uagAGGAGGUGc-AUCUCUU-----------UCuuUAG- -5'
14632 3' -47.1 NC_003521.1 + 2086 0.66 0.999982
Target:  5'- aAUgUUCUCaCGCGagaAGAGAGAGAAAUg -3'
miRNA:   3'- -UAgAGGAG-GUGCa--UCUCUUUCUUUAg -5'
14632 3' -47.1 NC_003521.1 + 96012 0.66 0.999982
Target:  5'- ---cCCUCCugGUGcAGGAGGAAAg- -3'
miRNA:   3'- uagaGGAGGugCAUcUCUUUCUUUag -5'
14632 3' -47.1 NC_003521.1 + 67687 0.66 0.999966
Target:  5'- gAUCUCCgauaGCGaGGAGGAAGAGGg- -3'
miRNA:   3'- -UAGAGGagg-UGCaUCUCUUUCUUUag -5'
14632 3' -47.1 NC_003521.1 + 86243 0.66 0.999966
Target:  5'- -gCUCCUUgACGUGcAGGgcGAAGUCg -3'
miRNA:   3'- uaGAGGAGgUGCAUcUCUuuCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 221747 0.67 0.999939
Target:  5'- -cCUCCUCCucACGgcccagcugGGAGGAcGGGAUCu -3'
miRNA:   3'- uaGAGGAGG--UGCa--------UCUCUUuCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 80289 0.67 0.99992
Target:  5'- cGUCUCuguCUCCGCGUAcGAGGAGGc---- -3'
miRNA:   3'- -UAGAG---GAGGUGCAU-CUCUUUCuuuag -5'
14632 3' -47.1 NC_003521.1 + 147041 0.67 0.999895
Target:  5'- cUUUCgCUCUGCGaccccGGGGGAGGGAGUCg -3'
miRNA:   3'- uAGAG-GAGGUGCa----UCUCUUUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 140703 0.67 0.999895
Target:  5'- aAUUUCCUCCugGU-GAGAAcGucAUCc -3'
miRNA:   3'- -UAGAGGAGGugCAuCUCUUuCuuUAG- -5'
14632 3' -47.1 NC_003521.1 + 13054 0.68 0.999824
Target:  5'- -aCUCCUCCGac--GAGGAAGAGAa- -3'
miRNA:   3'- uaGAGGAGGUgcauCUCUUUCUUUag -5'
14632 3' -47.1 NC_003521.1 + 103164 0.68 0.999712
Target:  5'- ---gUCUCCACGUagucguGGAGAAAGuuGUCc -3'
miRNA:   3'- uagaGGAGGUGCA------UCUCUUUCuuUAG- -5'
14632 3' -47.1 NC_003521.1 + 172715 0.69 0.999431
Target:  5'- cGUCUCCgUCCACGUcuuGGAGAccagcggguuGAGGuugaGAUCc -3'
miRNA:   3'- -UAGAGG-AGGUGCA---UCUCU----------UUCU----UUAG- -5'
14632 3' -47.1 NC_003521.1 + 11902 0.69 0.999431
Target:  5'- -cUUUCUCUACGUGGA---GGAGAUCg -3'
miRNA:   3'- uaGAGGAGGUGCAUCUcuuUCUUUAG- -5'
14632 3' -47.1 NC_003521.1 + 187103 0.69 0.999295
Target:  5'- cUCcCCUCCGCGcgAGAGAuuGAAGa- -3'
miRNA:   3'- uAGaGGAGGUGCa-UCUCUuuCUUUag -5'
14632 3' -47.1 NC_003521.1 + 120519 0.69 0.999132
Target:  5'- gAUCUCCUUCGCccGGGGAAGGGc--- -3'
miRNA:   3'- -UAGAGGAGGUGcaUCUCUUUCUuuag -5'
14632 3' -47.1 NC_003521.1 + 81701 0.7 0.998706
Target:  5'- cUCaUCUUCCACGUcccaGGAGAGcacGGAGUCg -3'
miRNA:   3'- uAG-AGGAGGUGCA----UCUCUUu--CUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.