miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 212687 0.84 0.055051
Target:  5'- -cGCCGUCgCCAGGGCaaggcugguGGGUCGGGCCu -3'
miRNA:   3'- cuCGGCAGgGGUCCCG---------CUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 38186 0.68 0.550103
Target:  5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3'
miRNA:   3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 14751 0.68 0.560199
Target:  5'- cGGGCCGgCCgcggCCGGGGCGcGccuUCGuGGCCg -3'
miRNA:   3'- -CUCGGCaGG----GGUCCCGCuC---AGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 118533 0.66 0.699912
Target:  5'- aAGCCGggauUCCCCAc-GCGGcUUGGGCCg -3'
miRNA:   3'- cUCGGC----AGGGGUccCGCUcAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 196970 0.71 0.389537
Target:  5'- gGAGCCGg--CCGGGGCGccuGUgaCGGGCCc -3'
miRNA:   3'- -CUCGGCaggGGUCCCGCu--CA--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 213290 0.71 0.396485
Target:  5'- gGAGaCCGUCuacgccaCCguGGGCGccUCGGGCCg -3'
miRNA:   3'- -CUC-GGCAG-------GGguCCCGCucAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 187610 0.71 0.397261
Target:  5'- uGGGCaCGgCCUgccGGGCGAGcCGGGCCg -3'
miRNA:   3'- -CUCG-GCaGGGgu-CCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 1152 0.7 0.421014
Target:  5'- -uGCCGUCCCCGGGaGCca--CGGcGCCg -3'
miRNA:   3'- cuCGGCAGGGGUCC-CGcucaGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 186297 0.7 0.461584
Target:  5'- -cGCCGggCCCCAGcGGCGccgugcagauccuGGUCcacgccGGGCCg -3'
miRNA:   3'- cuCGGCa-GGGGUC-CCGC-------------UCAG------CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 87719 0.68 0.540974
Target:  5'- -uGCCGUCgcgcgcgCCCGGcGGCGuGgUGGGCCc -3'
miRNA:   3'- cuCGGCAG-------GGGUC-CCGCuCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 194574 0.69 0.488289
Target:  5'- -cGCCa--CCgAGGGCGAcGUCGaGGCCg -3'
miRNA:   3'- cuCGGcagGGgUCCCGCU-CAGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 177773 0.7 0.453976
Target:  5'- cGGUCGUCgCCAGGGcCGAcg-GGGCCu -3'
miRNA:   3'- cUCGGCAGgGGUCCC-GCUcagCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 224115 0.71 0.366227
Target:  5'- aGAGUuccuCGUCgacgauguccaggCCguGGGcCGAGUCGGGCCa -3'
miRNA:   3'- -CUCG----GCAG-------------GGguCCC-GCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 211331 0.69 0.497058
Target:  5'- aGGCgGUCCCgCGGGcGCGAGUgguugGGGUCc -3'
miRNA:   3'- cUCGgCAGGG-GUCC-CGCUCAg----CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 104116 0.71 0.374388
Target:  5'- -uGCCaGUCCUCGGcGGCGuccuGcUCGGGCCc -3'
miRNA:   3'- cuCGG-CAGGGGUC-CCGCu---C-AGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 122463 0.7 0.428305
Target:  5'- aGAGCCGacgguucaagUCCaCCAuguccuuGGGCGGGUUcugcaGGGCCa -3'
miRNA:   3'- -CUCGGC----------AGG-GGU-------CCCGCUCAG-----CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 156887 0.68 0.532801
Target:  5'- cGGCCGcUgCCCgauggcacggGGGGCGA--CGGGCCg -3'
miRNA:   3'- cUCGGC-AgGGG----------UCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 93947 0.68 0.550103
Target:  5'- -cGCCGucgucuggcuuccUCCUCuGGGCGGGagGGGCg -3'
miRNA:   3'- cuCGGC-------------AGGGGuCCCGCUCagCCCGg -5'
14633 3' -64.2 NC_003521.1 + 151091 0.71 0.374388
Target:  5'- -cGCCGaCCCCu---CGGGUCGGGCCg -3'
miRNA:   3'- cuCGGCaGGGGucccGCUCAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 45722 0.71 0.397261
Target:  5'- cGGGgCGUCUgCGGGacGCGGGUCaGGCCg -3'
miRNA:   3'- -CUCgGCAGGgGUCC--CGCUCAGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.