miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 106529 0.67 0.587973
Target:  5'- uGGCgGUUCCCAGaagcgcugaaaGcGCGAGU-GGGCCg -3'
miRNA:   3'- cUCGgCAGGGGUC-----------C-CGCUCAgCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 112261 0.67 0.587973
Target:  5'- -cGCCGU-CCCAGGG-GAGUCacGGCg -3'
miRNA:   3'- cuCGGCAgGGGUCCCgCUCAGc-CCGg -5'
14633 3' -64.2 NC_003521.1 + 116714 0.67 0.587973
Target:  5'- -cGCCGUCCacuuccaCGGcGGUcccgGAGUCGGcGCCc -3'
miRNA:   3'- cuCGGCAGGg------GUC-CCG----CUCAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 87784 0.68 0.578681
Target:  5'- gGGGCCG-CCUCGucggucucGGGCGGccUGGGCCa -3'
miRNA:   3'- -CUCGGCaGGGGU--------CCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 207342 0.68 0.569422
Target:  5'- gGGGCgCGUCCCUcGGGUcGG-CGcGGCCg -3'
miRNA:   3'- -CUCG-GCAGGGGuCCCGcUCaGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 239983 0.68 0.569422
Target:  5'- cAGCaGUCUUCGGGGU-AGUCGGuGCCu -3'
miRNA:   3'- cUCGgCAGGGGUCCCGcUCAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 20770 0.68 0.560199
Target:  5'- -uGCUGUCCuUCcuGGCGuuggcgcuGUCGGGCCa -3'
miRNA:   3'- cuCGGCAGG-GGucCCGCu-------CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 129654 0.68 0.560199
Target:  5'- -cGCCGUCgCCGGGGCG-GcCGcGCUa -3'
miRNA:   3'- cuCGGCAGgGGUCCCGCuCaGCcCGG- -5'
14633 3' -64.2 NC_003521.1 + 166246 0.68 0.560199
Target:  5'- -uGCCG-CCC---GGCGAG-CGGGCCg -3'
miRNA:   3'- cuCGGCaGGGgucCCGCUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 14751 0.68 0.560199
Target:  5'- cGGGCCGgCCgcggCCGGGGCGcGccuUCGuGGCCg -3'
miRNA:   3'- -CUCGGCaGG----GGUCCCGCuC---AGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 112265 0.68 0.560199
Target:  5'- uGGCCGacuucaacUCCUacaAGGGCcaccuGAcGUCGGGCCa -3'
miRNA:   3'- cUCGGC--------AGGGg--UCCCG-----CU-CAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 93947 0.68 0.550103
Target:  5'- -cGCCGucgucuggcuuccUCCUCuGGGCGGGagGGGCg -3'
miRNA:   3'- cuCGGC-------------AGGGGuCCCGCUCagCCCGg -5'
14633 3' -64.2 NC_003521.1 + 238414 0.68 0.550103
Target:  5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3'
miRNA:   3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 38186 0.68 0.550103
Target:  5'- gGGGCCGcUCCCAGugcucgcGGuCGAgGUCGGGCa -3'
miRNA:   3'- -CUCGGCaGGGGUC-------CC-GCU-CAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 20909 0.68 0.541884
Target:  5'- gGAGCagGUCCCCGGGGaCcGGUcucaaucgcacgCGGGUCg -3'
miRNA:   3'- -CUCGg-CAGGGGUCCC-GcUCA------------GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 87719 0.68 0.540974
Target:  5'- -uGCCGUCgcgcgcgCCCGGcGGCGuGgUGGGCCc -3'
miRNA:   3'- cuCGGCAG-------GGGUC-CCGCuCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 156887 0.68 0.532801
Target:  5'- cGGCCGcUgCCCgauggcacggGGGGCGA--CGGGCCg -3'
miRNA:   3'- cUCGGC-AgGGG----------UCCCGCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 186487 0.69 0.518384
Target:  5'- cGAGUgG--CCCAGGGCGAGagccccgucgggaucUCGGGCg -3'
miRNA:   3'- -CUCGgCagGGGUCCCGCUC---------------AGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 168408 0.69 0.514804
Target:  5'- -cGCCGUUgguggCUAGGGCGGGcggcaGGGCCg -3'
miRNA:   3'- cuCGGCAGg----GGUCCCGCUCag---CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 172339 0.69 0.505898
Target:  5'- cGGCCGUCCUguggCAcacgucGGGCGGGU-GGGUCa -3'
miRNA:   3'- cUCGGCAGGG----GU------CCCGCUCAgCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.