miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 172128 0.67 0.971476
Target:  5'- cACGGUCaugagUUCGuCGCGGcACAUgGCCg -3'
miRNA:   3'- cUGCCAGaa---GAGC-GCGCC-UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 121209 0.67 0.971476
Target:  5'- cACGGUC---UCGCGCaGGGCGCgcagcuCCa -3'
miRNA:   3'- cUGCCAGaagAGCGCG-CCUGUGau----GG- -5'
14637 3' -54.6 NC_003521.1 + 107342 0.67 0.971201
Target:  5'- aGCGGcgccaggugauccUCgacCUCGgGCGGACAC-ACCu -3'
miRNA:   3'- cUGCC-------------AGaa-GAGCgCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 153241 0.67 0.968642
Target:  5'- uGAUGGaCUUCUUG-GCGu-CGCUACCg -3'
miRNA:   3'- -CUGCCaGAAGAGCgCGCcuGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 177198 0.67 0.965614
Target:  5'- uGCGGUaCUUCUCcagGCGG-CGCUGCa -3'
miRNA:   3'- cUGCCA-GAAGAGcg-CGCCuGUGAUGg -5'
14637 3' -54.6 NC_003521.1 + 81634 0.67 0.965614
Target:  5'- cGugGGUC-UCg-GCGCGGAUGgUGCg -3'
miRNA:   3'- -CugCCAGaAGagCGCGCCUGUgAUGg -5'
14637 3' -54.6 NC_003521.1 + 24444 0.67 0.965614
Target:  5'- cGGCGGgCUcggaacaggUC-CGCGCGGAcCACggGCCu -3'
miRNA:   3'- -CUGCCaGA---------AGaGCGCGCCU-GUGa-UGG- -5'
14637 3' -54.6 NC_003521.1 + 11492 0.67 0.965614
Target:  5'- -uCGG-CUUCgcucuaugUCGCGCacccGGGCAUUACCa -3'
miRNA:   3'- cuGCCaGAAG--------AGCGCG----CCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 150359 0.67 0.965614
Target:  5'- --aGGUCUg--CGUGCGGACcguggucgACUGCUa -3'
miRNA:   3'- cugCCAGAagaGCGCGCCUG--------UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 221829 0.67 0.965614
Target:  5'- gGGCGuGUCUcccUCgUCGCGCGG-CGCguccucgACCc -3'
miRNA:   3'- -CUGC-CAGA---AG-AGCGCGCCuGUGa------UGG- -5'
14637 3' -54.6 NC_003521.1 + 197651 0.67 0.962385
Target:  5'- cGCGGUggcgCUCGUGCGGcagcaGCGCcACCa -3'
miRNA:   3'- cUGCCAgaa-GAGCGCGCC-----UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 138587 0.68 0.958597
Target:  5'- cGCGG-CaUCUCGC-CGGACACcauguacgaggugUGCCa -3'
miRNA:   3'- cUGCCaGaAGAGCGcGCCUGUG-------------AUGG- -5'
14637 3' -54.6 NC_003521.1 + 55851 0.68 0.955309
Target:  5'- cACGGUg-UCcgaauugcaaaUCGCGCccaagaugGGACGCUACCa -3'
miRNA:   3'- cUGCCAgaAG-----------AGCGCG--------CCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 18429 0.68 0.955309
Target:  5'- uGCGGcCUgCUcaagaCGCGCGGcCugUGCCg -3'
miRNA:   3'- cUGCCaGAaGA-----GCGCGCCuGugAUGG- -5'
14637 3' -54.6 NC_003521.1 + 105928 0.68 0.955309
Target:  5'- aGACGGUCUg--CGUGUGGccgGCGCggaugaugACCg -3'
miRNA:   3'- -CUGCCAGAagaGCGCGCC---UGUGa-------UGG- -5'
14637 3' -54.6 NC_003521.1 + 131076 0.68 0.955309
Target:  5'- uGGCGGcgaccgCggCUCGCGCGGGCu---CCg -3'
miRNA:   3'- -CUGCCa-----GaaGAGCGCGCCUGugauGG- -5'
14637 3' -54.6 NC_003521.1 + 201210 0.68 0.955309
Target:  5'- cGGCGGUCUgCUCcCGCuGGGC-CgGCCg -3'
miRNA:   3'- -CUGCCAGAaGAGcGCG-CCUGuGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 92253 0.68 0.954933
Target:  5'- cGCGGUCUUUuggccggUCGCGUcGACGCguucaaACCg -3'
miRNA:   3'- cUGCCAGAAG-------AGCGCGcCUGUGa-----UGG- -5'
14637 3' -54.6 NC_003521.1 + 103254 0.68 0.951453
Target:  5'- aACGGU----UCGCGCGuGCACUGCUg -3'
miRNA:   3'- cUGCCAgaagAGCGCGCcUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 182159 0.68 0.951453
Target:  5'- aGGCGGUUaaaCUCGUGaCGGACG--GCCg -3'
miRNA:   3'- -CUGCCAGaa-GAGCGC-GCCUGUgaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.