miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 103254 0.68 0.951453
Target:  5'- aACGGU----UCGCGCGuGCACUGCUg -3'
miRNA:   3'- cUGCCAgaagAGCGCGCcUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 165873 0.68 0.949036
Target:  5'- aGCGGUgcaCgugCUCGgGCGGcggguacaccaccccGCGCUGCCg -3'
miRNA:   3'- cUGCCA---Gaa-GAGCgCGCC---------------UGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 135374 0.68 0.947381
Target:  5'- cGGCGGUUa--UCGCccGCGGGCGCcaaACCg -3'
miRNA:   3'- -CUGCCAGaagAGCG--CGCCUGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 91765 0.68 0.943089
Target:  5'- cGCGGcCgcgUCgaagcccaGCGCGGGCACgGCCu -3'
miRNA:   3'- cUGCCaGa--AGag------CGCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 187599 0.69 0.933838
Target:  5'- cGGCGGUCgcUUCGCccGCGGACucccggcgaGCUcACCg -3'
miRNA:   3'- -CUGCCAGaaGAGCG--CGCCUG---------UGA-UGG- -5'
14637 3' -54.6 NC_003521.1 + 88262 0.69 0.933838
Target:  5'- cACGGUgga---GCGCGuGACGCUGCCg -3'
miRNA:   3'- cUGCCAgaagagCGCGC-CUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 149746 0.69 0.932373
Target:  5'- uGGCaGGUCUUCUgcggcgagggcggcCGCGCGGuACGCcucaacGCCa -3'
miRNA:   3'- -CUG-CCAGAAGA--------------GCGCGCC-UGUGa-----UGG- -5'
14637 3' -54.6 NC_003521.1 + 137025 0.69 0.928876
Target:  5'- cACGGUCaUCUCGC-CGGAgCACgGCg -3'
miRNA:   3'- cUGCCAGaAGAGCGcGCCU-GUGaUGg -5'
14637 3' -54.6 NC_003521.1 + 47976 0.69 0.918278
Target:  5'- cGCGGcgucgCUUCUCGUccaCGGACGCgccGCCg -3'
miRNA:   3'- cUGCCa----GAAGAGCGc--GCCUGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 57415 0.69 0.918278
Target:  5'- uGCGGUCgcccaccgUCUCGCGgaCGGGCucCUGCa -3'
miRNA:   3'- cUGCCAGa-------AGAGCGC--GCCUGu-GAUGg -5'
14637 3' -54.6 NC_003521.1 + 154210 0.69 0.912642
Target:  5'- cGACaaGGUCaagucccUCUCGCGCGaGCGCUucGCCg -3'
miRNA:   3'- -CUG--CCAGa------AGAGCGCGCcUGUGA--UGG- -5'
14637 3' -54.6 NC_003521.1 + 155935 0.69 0.912642
Target:  5'- uGACGGcCUaCUCGCGCcacccggaccGGGCGgccuuCUACCg -3'
miRNA:   3'- -CUGCCaGAaGAGCGCG----------CCUGU-----GAUGG- -5'
14637 3' -54.6 NC_003521.1 + 131805 0.69 0.912642
Target:  5'- -gUGGUaccCUCGcCGCGGACccACUACCu -3'
miRNA:   3'- cuGCCAgaaGAGC-GCGCCUG--UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 79344 0.7 0.906784
Target:  5'- --aGGg--UCUCGCGCaaaGGACACgGCCa -3'
miRNA:   3'- cugCCagaAGAGCGCG---CCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 26147 0.7 0.894405
Target:  5'- -gUGGUCUUC-CGCGUcuacGGACuGCUGCUg -3'
miRNA:   3'- cuGCCAGAAGaGCGCG----CCUG-UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 212502 0.7 0.894405
Target:  5'- cGGCGGUCcgcaggC-CGCGCcgGGGuCGCUGCCg -3'
miRNA:   3'- -CUGCCAGaa----GaGCGCG--CCU-GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 41855 0.7 0.894405
Target:  5'- uGACGGUCagcacgcUCUCGCGCcuGGugcccaaccucCACUGCCu -3'
miRNA:   3'- -CUGCCAGa------AGAGCGCG--CCu----------GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 133968 0.7 0.881165
Target:  5'- uACGGgcgUCcaUGCGCGGACGCUgGCCg -3'
miRNA:   3'- cUGCCagaAGa-GCGCGCCUGUGA-UGG- -5'
14637 3' -54.6 NC_003521.1 + 180066 0.71 0.852222
Target:  5'- cGGCGGggaUUCUCcCGCGGcgACUGCCg -3'
miRNA:   3'- -CUGCCag-AAGAGcGCGCCugUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 983 0.71 0.844503
Target:  5'- cGGCGGUCUgCUCcCGUGGGC-CgGCCg -3'
miRNA:   3'- -CUGCCAGAaGAGcGCGCCUGuGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.