miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 105549 0.71 0.914244
Target:  5'- cGUGUccucguccuccucgUCGuCGGCG---UCCGCCGCCGu -3'
miRNA:   3'- -CACA--------------AGCuGUCGCuaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 107804 0.69 0.957712
Target:  5'- ----cCGACGGUGAUuagggugUUCCACCGCgGc -3'
miRNA:   3'- cacaaGCUGUCGCUA-------AAGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 110034 0.67 0.989271
Target:  5'- cGUGggCGcGCuGCGGUgaCC-CCGCCGa -3'
miRNA:   3'- -CACaaGC-UGuCGCUAaaGGuGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 110688 0.7 0.941667
Target:  5'- -gGUggCGGCAGCGGcgg-CGCCGCCGa -3'
miRNA:   3'- caCAa-GCUGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 110908 0.66 0.994501
Target:  5'- gGUGUUCGcGCAGCaGGcgcgCgGCCGCCc -3'
miRNA:   3'- -CACAAGC-UGUCG-CUaaa-GgUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 113280 0.71 0.921577
Target:  5'- cUGgcCGACGGCGug--CUGCCGCCGc -3'
miRNA:   3'- cACaaGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 114252 0.67 0.986325
Target:  5'- ----aCGACGGCGGcUUCCcGCUGCCc -3'
miRNA:   3'- cacaaGCUGUCGCUaAAGG-UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 116363 0.67 0.984637
Target:  5'- -aGcgCGGCGGCGAacgcgugCCGCCGCgGc -3'
miRNA:   3'- caCaaGCUGUCGCUaaa----GGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 116760 0.7 0.950324
Target:  5'- cGUGgcUUGuGCAGCGugggCCGCCGCCGc -3'
miRNA:   3'- -CACa-AGC-UGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 116822 0.73 0.855385
Target:  5'- cUGggUGcuGCAGCGGUUUCCagaccugacgGCCGCCGa -3'
miRNA:   3'- cACaaGC--UGUCGCUAAAGG----------UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118704 0.69 0.961626
Target:  5'- cGUGUUCagccGCGGCGAga--CGCCGCUGc -3'
miRNA:   3'- -CACAAGc---UGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118932 0.66 0.992126
Target:  5'- cGUGggCGGCGGCGucccgucagggCCAgCGCCc -3'
miRNA:   3'- -CACaaGCUGUCGCuaaa-------GGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 120572 0.66 0.995243
Target:  5'- gGUG-UCGA-GGCGAUgcacggcgCgGCCGCCGg -3'
miRNA:   3'- -CACaAGCUgUCGCUAaa------GgUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 121587 0.66 0.991698
Target:  5'- cGUGUUCucCAGCGAgca-CACCaGCUGg -3'
miRNA:   3'- -CACAAGcuGUCGCUaaagGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 122528 0.69 0.969278
Target:  5'- -aGgcCGGCGGCGGUgguagugcugcugCUACCGCCGc -3'
miRNA:   3'- caCaaGCUGUCGCUAaa-----------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 122728 0.73 0.847598
Target:  5'- cGUGgUCGugGGCGAcgg-CGCCGCCGa -3'
miRNA:   3'- -CACaAGCugUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 122809 0.71 0.904065
Target:  5'- -aGUcccgCGGCAGCGAcacgCCGCCGCUa -3'
miRNA:   3'- caCAa---GCUGUCGCUaaa-GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 123033 0.67 0.984637
Target:  5'- cUGcUUCuGACGGUG---UCCGCCGCCa -3'
miRNA:   3'- cAC-AAG-CUGUCGCuaaAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 123485 0.66 0.995313
Target:  5'- cGUGUccgUCGcCGGCGGggugucgucgucgCCGCUGCCGc -3'
miRNA:   3'- -CACA---AGCuGUCGCUaaa----------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 123612 0.68 0.971008
Target:  5'- -cGUcagCGGguGCGAcaucUCCACCGCCu -3'
miRNA:   3'- caCAa--GCUguCGCUaa--AGGUGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.