miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 56908 0.66 0.993667
Target:  5'- -cGUcgCGACAGCGccgcagCACCGCCu -3'
miRNA:   3'- caCAa-GCUGUCGCuaaag-GUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 59421 0.82 0.370513
Target:  5'- cGUGgcacgCGACAGCGGcg-CCGCCGCCGg -3'
miRNA:   3'- -CACaa---GCUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 59599 0.69 0.968085
Target:  5'- cGUGgucaaCGACGGCGAUcggCCAUCGCa- -3'
miRNA:   3'- -CACaa---GCUGUCGCUAaa-GGUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 68356 0.68 0.976267
Target:  5'- ----cCGACGGCGca--CCGCUGCCGg -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 69211 0.68 0.971008
Target:  5'- ---gUCGGCGGCacuc-CCGCCGCCGc -3'
miRNA:   3'- cacaAGCUGUCGcuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 74004 0.66 0.992736
Target:  5'- ----aCGACAaccugguacugcGCGAgcUCUACCGCCGc -3'
miRNA:   3'- cacaaGCUGU------------CGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 75060 0.67 0.989271
Target:  5'- --cUUCGGCA-CGAUgaugggcaagCCGCCGCCGc -3'
miRNA:   3'- cacAAGCUGUcGCUAaa--------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 77593 0.69 0.961626
Target:  5'- aUGUUCGuCcGCGAg-UCCcagGCCGCCGg -3'
miRNA:   3'- cACAAGCuGuCGCUaaAGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 82849 0.67 0.990546
Target:  5'- -cGggCGGCGGCGucgcuaCCAgCGCCGu -3'
miRNA:   3'- caCaaGCUGUCGCuaaa--GGUgGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 84766 0.68 0.978617
Target:  5'- ----gCGGCGGCGAcguugUUggCACCGCCGa -3'
miRNA:   3'- cacaaGCUGUCGCU-----AAagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 85145 0.76 0.713173
Target:  5'- ---cUCGGCGGCGAUgacaucguccagaccUCCGCCGCCa -3'
miRNA:   3'- cacaAGCUGUCGCUAa--------------AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 89315 0.71 0.910134
Target:  5'- cUGgcCGACGGCGGUagUUCACCGuCCGc -3'
miRNA:   3'- cACaaGCUGUCGCUAa-AGGUGGC-GGC- -5'
14638 3' -52.8 NC_003521.1 + 90156 0.68 0.980791
Target:  5'- ------aGCAGCGGcg-CCGCCGCCGg -3'
miRNA:   3'- cacaagcUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 91198 0.67 0.982795
Target:  5'- ---cUCGcCGGCGGcgUCCAgCGCCGu -3'
miRNA:   3'- cacaAGCuGUCGCUaaAGGUgGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 94956 0.68 0.971008
Target:  5'- ---gUCGuCGGCGccgcCCGCCGCCGg -3'
miRNA:   3'- cacaAGCuGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 98128 0.68 0.980791
Target:  5'- ----gCGGCAGCGGagUCCgugguagcugcuGCCGCCGu -3'
miRNA:   3'- cacaaGCUGUCGCUaaAGG------------UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 100251 0.66 0.993667
Target:  5'- gGUGccCGACGaCGAgcugucgCCGCCGCCGc -3'
miRNA:   3'- -CACaaGCUGUcGCUaaa----GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 100472 0.67 0.986325
Target:  5'- -aGUggUGACGGCcGUUgCUACCGCCGc -3'
miRNA:   3'- caCAa-GCUGUCGcUAAaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 101014 0.82 0.412021
Target:  5'- aGUGgcUCGACGGCGGcuucgCCACCGCCGa -3'
miRNA:   3'- -CACa-AGCUGUCGCUaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 105446 0.67 0.990424
Target:  5'- -gGUUUGGCgcccgcgGGCGAUaaCCGCCGCgGa -3'
miRNA:   3'- caCAAGCUG-------UCGCUAaaGGUGGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.