miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 187575 0.68 0.976267
Target:  5'- gGUGUUCcucuGCuGCGAccgcUUUCUGCUGCCGg -3'
miRNA:   3'- -CACAAGc---UGuCGCU----AAAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 186369 0.71 0.915972
Target:  5'- ----aCGGCAGCGAgcuggaaUUCACCGCCa -3'
miRNA:   3'- cacaaGCUGUCGCUaa-----AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 184666 0.66 0.991698
Target:  5'- cGUGUUCGcgcGCAGCGAgcagCacgaGCCGCa- -3'
miRNA:   3'- -CACAAGC---UGUCGCUaaa-Gg---UGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 183221 0.67 0.990546
Target:  5'- -aGcgCGACGGCacgcugacucGGggUUCGCCGCCGg -3'
miRNA:   3'- caCaaGCUGUCG----------CUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 182973 0.66 0.995243
Target:  5'- cGUGUcuagcagCGACGGCGuucggcgUCACCgGCCGa -3'
miRNA:   3'- -CACAa------GCUGUCGCuaaa---GGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 180080 0.68 0.978617
Target:  5'- ----cCG-CGGCGAcugCCGCCGCCGu -3'
miRNA:   3'- cacaaGCuGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 178359 0.67 0.989271
Target:  5'- ----aCGACGGCGGUUUCCAaaaauCC-CCGu -3'
miRNA:   3'- cacaaGCUGUCGCUAAAGGU-----GGcGGC- -5'
14638 3' -52.8 NC_003521.1 + 173242 0.66 0.995243
Target:  5'- cGUGUuggCGACucuggcccGCGGggcCCGCCGCCu -3'
miRNA:   3'- -CACAa--GCUGu-------CGCUaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 172469 0.68 0.973733
Target:  5'- -gGgcCGGCAGCGGUg--CGCCGUCGg -3'
miRNA:   3'- caCaaGCUGUCGCUAaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 170981 0.66 0.995243
Target:  5'- ---aUCGGCAGCGucaUCgACCuGCCGc -3'
miRNA:   3'- cacaAGCUGUCGCuaaAGgUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 168698 0.66 0.992736
Target:  5'- -cGUccUCGGucaGGUGAaucUCCACCGCCGc -3'
miRNA:   3'- caCA--AGCUg--UCGCUaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 166620 0.68 0.980791
Target:  5'- cGUGgcagaaGACGGCGucgggCCGCgCGCCGg -3'
miRNA:   3'- -CACaag---CUGUCGCuaaa-GGUG-GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 166442 0.71 0.92695
Target:  5'- cGUGUagaUCGAgGGCGAg--CCGUCGCCGc -3'
miRNA:   3'- -CACA---AGCUgUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 166216 0.66 0.992736
Target:  5'- uUGgcgCGGCGGCGAgg-CgCGCCgGCCGc -3'
miRNA:   3'- cACaa-GCUGUCGCUaaaG-GUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 165269 0.66 0.994501
Target:  5'- -aGggCGcUGGCGuag-CCGCCGCCGg -3'
miRNA:   3'- caCaaGCuGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 163301 0.69 0.96496
Target:  5'- -aGUUgCGACGGCGug-UCCACgGUCa -3'
miRNA:   3'- caCAA-GCUGUCGCuaaAGGUGgCGGc -5'
14638 3' -52.8 NC_003521.1 + 163104 0.67 0.986325
Target:  5'- -cGggCGcCAGCGccacgaCCACCGCCGc -3'
miRNA:   3'- caCaaGCuGUCGCuaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 160331 0.67 0.989271
Target:  5'- cGUGggCGGC-GCGGUggCCuCCGUCGu -3'
miRNA:   3'- -CACaaGCUGuCGCUAaaGGuGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 157961 0.67 0.989271
Target:  5'- cUGggCGACgacggcgcugguAGCGAcg-CCGCCGCCc -3'
miRNA:   3'- cACaaGCUG------------UCGCUaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 156731 0.67 0.986325
Target:  5'- aUGUUCGugGGCucGGUcUuuGCCGCCc -3'
miRNA:   3'- cACAAGCugUCG--CUAaAggUGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.