miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 166442 0.71 0.92695
Target:  5'- cGUGUagaUCGAgGGCGAg--CCGUCGCCGc -3'
miRNA:   3'- -CACA---AGCUgUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 227365 0.7 0.932088
Target:  5'- ---gUCGACGGCGcua-CCGCCGCUGc -3'
miRNA:   3'- cacaAGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 153429 0.7 0.941667
Target:  5'- cGUGagCGuCGGCGucaccUCCGCCGCCu -3'
miRNA:   3'- -CACaaGCuGUCGCuaa--AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 110688 0.7 0.941667
Target:  5'- -gGUggCGGCAGCGGcgg-CGCCGCCGa -3'
miRNA:   3'- caCAa-GCUGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 239687 0.7 0.94611
Target:  5'- -gGgaCGGCAGCGGUUcgugUCCcgucGCCGCCu -3'
miRNA:   3'- caCaaGCUGUCGCUAA----AGG----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 39460 0.7 0.94611
Target:  5'- -gGgaCGGCAGCGGUUcgugUCCcgucGCCGCCu -3'
miRNA:   3'- caCaaGCUGUCGCUAA----AGG----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 43638 0.7 0.950324
Target:  5'- -aGga-GGCGGCGg---CCGCCGCCGg -3'
miRNA:   3'- caCaagCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 126571 0.7 0.950324
Target:  5'- -cGUg-GGCAGCGGgaagCCGCCGUCGu -3'
miRNA:   3'- caCAagCUGUCGCUaaa-GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 116760 0.7 0.950324
Target:  5'- cGUGgcUUGuGCAGCGugggCCGCCGCCGc -3'
miRNA:   3'- -CACa-AGC-UGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 124967 0.69 0.954312
Target:  5'- cGUGUUUGACgaGGCGugcgCCGCCcGCCu -3'
miRNA:   3'- -CACAAGCUG--UCGCuaaaGGUGG-CGGc -5'
14638 3' -52.8 NC_003521.1 + 53883 0.69 0.954312
Target:  5'- cUGcUCGAguGCGuucgCCGCCGCCc -3'
miRNA:   3'- cACaAGCUguCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 107804 0.69 0.957712
Target:  5'- ----cCGACGGUGAUuagggugUUCCACCGCgGc -3'
miRNA:   3'- cacaaGCUGUCGCUA-------AAGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 21033 0.69 0.958078
Target:  5'- ----aCGccACGGCGAgaUCCACCGCUGu -3'
miRNA:   3'- cacaaGC--UGUCGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 187989 0.69 0.958078
Target:  5'- -aGUcgUCGAUgcuGuCGAUcUCCACCGCCGu -3'
miRNA:   3'- caCA--AGCUGu--C-GCUAaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 16793 0.69 0.958078
Target:  5'- -gGggCGACGGCGcccgCCccgACCGCCGg -3'
miRNA:   3'- caCaaGCUGUCGCuaaaGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 156050 0.69 0.961626
Target:  5'- cUGcUUCGGCGGUGccaacaacGUcgCCGCCGCCGc -3'
miRNA:   3'- cAC-AAGCUGUCGC--------UAaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 12234 0.69 0.961626
Target:  5'- -gGUUCGACGGCaGAccucacUCuCGCUGCCGa -3'
miRNA:   3'- caCAAGCUGUCG-CUaa----AG-GUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118704 0.69 0.961626
Target:  5'- cGUGUUCagccGCGGCGAga--CGCCGCUGc -3'
miRNA:   3'- -CACAAGc---UGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 77593 0.69 0.961626
Target:  5'- aUGUUCGuCcGCGAg-UCCcagGCCGCCGg -3'
miRNA:   3'- cACAAGCuGuCGCUaaAGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 163301 0.69 0.96496
Target:  5'- -aGUUgCGACGGCGug-UCCACgGUCa -3'
miRNA:   3'- caCAA-GCUGUCGCuaaAGGUGgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.