miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 56908 0.66 0.993667
Target:  5'- -cGUcgCGACAGCGccgcagCACCGCCu -3'
miRNA:   3'- caCAa-GCUGUCGCuaaag-GUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 74004 0.66 0.992736
Target:  5'- ----aCGACAaccugguacugcGCGAgcUCUACCGCCGc -3'
miRNA:   3'- cacaaGCUGU------------CGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 35473 0.66 0.992736
Target:  5'- ---gUCGugcACGGCGcagcugCCGCCGCCGa -3'
miRNA:   3'- cacaAGC---UGUCGCuaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118932 0.66 0.992126
Target:  5'- cGUGggCGGCGGCGucccgucagggCCAgCGCCc -3'
miRNA:   3'- -CACaaGCUGUCGCuaaa-------GGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 5535 0.66 0.994501
Target:  5'- gGUGa-CGGCAGcCGGcgcggCCGCCGCCa -3'
miRNA:   3'- -CACaaGCUGUC-GCUaaa--GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 124447 0.66 0.994501
Target:  5'- cGUGguugggccgCGGCGGCacgcgUUCGCCGCCGc -3'
miRNA:   3'- -CACaa-------GCUGUCGcuaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 120572 0.66 0.995243
Target:  5'- gGUG-UCGA-GGCGAUgcacggcgCgGCCGCCGg -3'
miRNA:   3'- -CACaAGCUgUCGCUAaa------GgUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 150673 0.66 0.995243
Target:  5'- ----cCGGCGGCGGcg-CCGCUGCUGc -3'
miRNA:   3'- cacaaGCUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 131195 0.66 0.991698
Target:  5'- aUGUUCGcccgcuACGGCGAgaggggCCGgCGCCa -3'
miRNA:   3'- cACAAGC------UGUCGCUaaa---GGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 121587 0.66 0.991698
Target:  5'- cGUGUUCucCAGCGAgca-CACCaGCUGg -3'
miRNA:   3'- -CACAAGcuGUCGCUaaagGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 155662 0.66 0.992736
Target:  5'- cUGggUGGCGGCGGaggUCUggacgauucaucGCCGCCGa -3'
miRNA:   3'- cACaaGCUGUCGCUaa-AGG------------UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 212854 0.67 0.984637
Target:  5'- cGUGgcCGugAGCGccgccuggcGUUUCUACCGCgGu -3'
miRNA:   3'- -CACaaGCugUCGC---------UAAAGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 100472 0.67 0.986325
Target:  5'- -aGUggUGACGGCcGUUgCUACCGCCGc -3'
miRNA:   3'- caCAa-GCUGUCGcUAAaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 125532 0.67 0.984637
Target:  5'- ---aUCGGCAGCGc-UUCCugCGUCa -3'
miRNA:   3'- cacaAGCUGUCGCuaAAGGugGCGGc -5'
14638 3' -52.8 NC_003521.1 + 105446 0.67 0.990424
Target:  5'- -gGUUUGGCgcccgcgGGCGAUaaCCGCCGCgGa -3'
miRNA:   3'- caCAAGCUG-------UCGCUAaaGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 160331 0.67 0.989271
Target:  5'- cGUGggCGGC-GCGGUggCCuCCGUCGu -3'
miRNA:   3'- -CACaaGCUGuCGCUAaaGGuGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 75060 0.67 0.989271
Target:  5'- --cUUCGGCA-CGAUgaugggcaagCCGCCGCCGc -3'
miRNA:   3'- cacAAGCUGUcGCUAaa--------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 147892 0.67 0.987867
Target:  5'- gGUGUUCGAUcggaaaaauGGCGccg-UCGCUGCCGu -3'
miRNA:   3'- -CACAAGCUG---------UCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 204733 0.67 0.987867
Target:  5'- -gGUggCGAgGGUGGUgauggaggcgCCGCCGCCGc -3'
miRNA:   3'- caCAa-GCUgUCGCUAaa--------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 114252 0.67 0.986325
Target:  5'- ----aCGACGGCGGcUUCCcGCUGCCc -3'
miRNA:   3'- cacaaGCUGUCGCUaAAGG-UGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.