miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 197189 0.69 0.96496
Target:  5'- ----cCGGCGGCGg---CCGCCGCCu -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 59599 0.69 0.968085
Target:  5'- cGUGgucaaCGACGGCGAUcggCCAUCGCa- -3'
miRNA:   3'- -CACaa---GCUGUCGCUAaa-GGUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 139802 0.69 0.968085
Target:  5'- ---cUCGGCGGUGGcgaagCCGCCGUCGa -3'
miRNA:   3'- cacaAGCUGUCGCUaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 3634 0.69 0.968085
Target:  5'- uUGUUCucUAGCGugccacggCCGCCGCCGu -3'
miRNA:   3'- cACAAGcuGUCGCuaaa----GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 122528 0.69 0.969278
Target:  5'- -aGgcCGGCGGCGGUgguagugcugcugCUACCGCCGc -3'
miRNA:   3'- caCaaGCUGUCGCUAaa-----------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 123612 0.68 0.971008
Target:  5'- -cGUcagCGGguGCGAcaucUCCACCGCCu -3'
miRNA:   3'- caCAa--GCUguCGCUaa--AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 94956 0.68 0.971008
Target:  5'- ---gUCGuCGGCGccgcCCGCCGCCGg -3'
miRNA:   3'- cacaAGCuGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 188488 0.68 0.971008
Target:  5'- -aGgcCGugGGCcugggUCCGCCGCCGa -3'
miRNA:   3'- caCaaGCugUCGcuaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 69211 0.68 0.971008
Target:  5'- ---gUCGGCGGCacuc-CCGCCGCCGc -3'
miRNA:   3'- cacaAGCUGUCGcuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 172469 0.68 0.973733
Target:  5'- -gGgcCGGCAGCGGUg--CGCCGUCGg -3'
miRNA:   3'- caCaaGCUGUCGCUAaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 222067 0.68 0.975775
Target:  5'- ---gUCGcaGCAGCGAcccgucggcgCCACCGCCGc -3'
miRNA:   3'- cacaAGC--UGUCGCUaaa-------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 187575 0.68 0.976267
Target:  5'- gGUGUUCcucuGCuGCGAccgcUUUCUGCUGCCGg -3'
miRNA:   3'- -CACAAGc---UGuCGCU----AAAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 68356 0.68 0.976267
Target:  5'- ----cCGACGGCGca--CCGCUGCCGg -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 180080 0.68 0.978617
Target:  5'- ----cCG-CGGCGAcugCCGCCGCCGu -3'
miRNA:   3'- cacaaGCuGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 84766 0.68 0.978617
Target:  5'- ----gCGGCGGCGAcguugUUggCACCGCCGa -3'
miRNA:   3'- cacaaGCUGUCGCU-----AAagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 194157 0.68 0.978617
Target:  5'- ---cUCGGCgGGCGG-UUCCAUCGCCc -3'
miRNA:   3'- cacaAGCUG-UCGCUaAAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 190360 0.68 0.979942
Target:  5'- cGUGUcacCGACAcGCGGcuuucggcuccgUCCACCGCUGa -3'
miRNA:   3'- -CACAa--GCUGU-CGCUaa----------AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 127409 0.68 0.980791
Target:  5'- gGUGgUCGuGCAGCGcgUUCacguagGCCGCCa -3'
miRNA:   3'- -CACaAGC-UGUCGCuaAAGg-----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 218615 0.68 0.980791
Target:  5'- -gGUUCGGCcgccagcgcgcGGCGGUaagcggCCACgGCCGg -3'
miRNA:   3'- caCAAGCUG-----------UCGCUAaa----GGUGgCGGC- -5'
14638 3' -52.8 NC_003521.1 + 166620 0.68 0.980791
Target:  5'- cGUGgcagaaGACGGCGucgggCCGCgCGCCGg -3'
miRNA:   3'- -CACaag---CUGUCGCuaaa-GGUG-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.