miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 136781 0.67 0.989271
Target:  5'- cUGcgCGACAGCGGgcucacggUCaCGCUGCCc -3'
miRNA:   3'- cACaaGCUGUCGCUaa------AG-GUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 38026 0.67 0.989271
Target:  5'- uUGUUCGACGGCGG-UUCgACgGUa- -3'
miRNA:   3'- cACAAGCUGUCGCUaAAGgUGgCGgc -5'
14638 3' -52.8 NC_003521.1 + 160331 0.67 0.989271
Target:  5'- cGUGggCGGC-GCGGUggCCuCCGUCGu -3'
miRNA:   3'- -CACaaGCUGuCGCUAaaGGuGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 204733 0.67 0.987867
Target:  5'- -gGUggCGAgGGUGGUgauggaggcgCCGCCGCCGc -3'
miRNA:   3'- caCAa-GCUgUCGCUAaa--------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 147892 0.67 0.987867
Target:  5'- gGUGUUCGAUcggaaaaauGGCGccg-UCGCUGCCGu -3'
miRNA:   3'- -CACAAGCUG---------UCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 55195 0.67 0.987867
Target:  5'- ----aCGAcCGGCGAUggcagUCCGCCGCg- -3'
miRNA:   3'- cacaaGCU-GUCGCUAa----AGGUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 218034 0.67 0.98742
Target:  5'- uUGggCGGCGGCGGcguccgcagguagaUgaggUCCACCGUCu -3'
miRNA:   3'- cACaaGCUGUCGCU--------------Aa---AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 156731 0.67 0.986325
Target:  5'- aUGUUCGugGGCucGGUcUuuGCCGCCc -3'
miRNA:   3'- cACAAGCugUCG--CUAaAggUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 114252 0.67 0.986325
Target:  5'- ----aCGACGGCGGcUUCCcGCUGCCc -3'
miRNA:   3'- cacaaGCUGUCGCUaAAGG-UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 198803 0.67 0.986325
Target:  5'- cGUGgugcCGGCGGCGucugUCgUGCCGCCGu -3'
miRNA:   3'- -CACaa--GCUGUCGCuaa-AG-GUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 100472 0.67 0.986325
Target:  5'- -aGUggUGACGGCcGUUgCUACCGCCGc -3'
miRNA:   3'- caCAa-GCUGUCGcUAAaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 137162 0.67 0.986325
Target:  5'- aUGgccgCGgccGCAGCGg---CCGCCGCCGa -3'
miRNA:   3'- cACaa--GC---UGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 163104 0.67 0.986325
Target:  5'- -cGggCGcCAGCGccacgaCCACCGCCGc -3'
miRNA:   3'- caCaaGCuGUCGCuaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 212854 0.67 0.984637
Target:  5'- cGUGgcCGugAGCGccgccuggcGUUUCUACCGCgGu -3'
miRNA:   3'- -CACaaGCugUCGC---------UAAAGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 123033 0.67 0.984637
Target:  5'- cUGcUUCuGACGGUG---UCCGCCGCCa -3'
miRNA:   3'- cAC-AAG-CUGUCGCuaaAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 125532 0.67 0.984637
Target:  5'- ---aUCGGCAGCGc-UUCCugCGUCa -3'
miRNA:   3'- cacaAGCUGUCGCuaAAGGugGCGGc -5'
14638 3' -52.8 NC_003521.1 + 116363 0.67 0.984637
Target:  5'- -aGcgCGGCGGCGAacgcgugCCGCCGCgGc -3'
miRNA:   3'- caCaaGCUGUCGCUaaa----GGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 91198 0.67 0.982795
Target:  5'- ---cUCGcCGGCGGcgUCCAgCGCCGu -3'
miRNA:   3'- cacaAGCuGUCGCUaaAGGUgGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 127409 0.68 0.980791
Target:  5'- gGUGgUCGuGCAGCGcgUUCacguagGCCGCCa -3'
miRNA:   3'- -CACaAGC-UGUCGCuaAAGg-----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 218615 0.68 0.980791
Target:  5'- -gGUUCGGCcgccagcgcgcGGCGGUaagcggCCACgGCCGg -3'
miRNA:   3'- caCAAGCUG-----------UCGCUAaa----GGUGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.