miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 239687 0.7 0.94611
Target:  5'- -gGgaCGGCAGCGGUUcgugUCCcgucGCCGCCu -3'
miRNA:   3'- caCaaGCUGUCGCUAA----AGG----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 235245 1.1 0.008553
Target:  5'- cGUGUUCGACAGCGAUUUCCACCGCCGa -3'
miRNA:   3'- -CACAAGCUGUCGCUAAAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 228581 0.72 0.862974
Target:  5'- ---cUCGGCAGCGAgagugaggUCUGCCGUCGa -3'
miRNA:   3'- cacaAGCUGUCGCUaa------AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 227365 0.7 0.932088
Target:  5'- ---gUCGACGGCGcua-CCGCCGCUGc -3'
miRNA:   3'- cacaAGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 222067 0.68 0.975775
Target:  5'- ---gUCGcaGCAGCGAcccgucggcgCCACCGCCGc -3'
miRNA:   3'- cacaAGC--UGUCGCUaaa-------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 218615 0.68 0.980791
Target:  5'- -gGUUCGGCcgccagcgcgcGGCGGUaagcggCCACgGCCGg -3'
miRNA:   3'- caCAAGCUG-----------UCGCUAaa----GGUGgCGGC- -5'
14638 3' -52.8 NC_003521.1 + 218034 0.67 0.98742
Target:  5'- uUGggCGGCGGCGGcguccgcagguagaUgaggUCCACCGUCu -3'
miRNA:   3'- cACaaGCUGUCGCU--------------Aa---AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 212854 0.67 0.984637
Target:  5'- cGUGgcCGugAGCGccgccuggcGUUUCUACCGCgGu -3'
miRNA:   3'- -CACaaGCugUCGC---------UAAAGGUGGCGgC- -5'
14638 3' -52.8 NC_003521.1 + 204733 0.67 0.987867
Target:  5'- -gGUggCGAgGGUGGUgauggaggcgCCGCCGCCGc -3'
miRNA:   3'- caCAa-GCUgUCGCUAaa--------GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 204620 0.66 0.993667
Target:  5'- aUGUggCGACAGCGuUUgagCCGCUcgGCCa -3'
miRNA:   3'- cACAa-GCUGUCGCuAAa--GGUGG--CGGc -5'
14638 3' -52.8 NC_003521.1 + 203027 0.73 0.847598
Target:  5'- -gGUUCGGCGGUGAUagCCGgUGCCa -3'
miRNA:   3'- caCAAGCUGUCGCUAaaGGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 200427 0.8 0.493469
Target:  5'- -aGUUCGACAGCGAggugcgCCACgaCGCCGa -3'
miRNA:   3'- caCAAGCUGUCGCUaaa---GGUG--GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 198803 0.67 0.986325
Target:  5'- cGUGgugcCGGCGGCGucugUCgUGCCGCCGu -3'
miRNA:   3'- -CACaa--GCUGUCGCuaa-AG-GUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 198208 0.66 0.994501
Target:  5'- ----aUGGCGGCGAcgg-CGCCGCCGg -3'
miRNA:   3'- cacaaGCUGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 197189 0.69 0.96496
Target:  5'- ----cCGGCGGCGg---CCGCCGCCu -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 196363 0.72 0.877537
Target:  5'- -gGUUCu-CGGCGAacacUUCCACCGCCu -3'
miRNA:   3'- caCAAGcuGUCGCUa---AAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 194157 0.68 0.978617
Target:  5'- ---cUCGGCgGGCGG-UUCCAUCGCCc -3'
miRNA:   3'- cacaAGCUG-UCGCUaAAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 190360 0.68 0.979942
Target:  5'- cGUGUcacCGACAcGCGGcuuucggcuccgUCCACCGCUGa -3'
miRNA:   3'- -CACAa--GCUGU-CGCUaa----------AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 188488 0.68 0.971008
Target:  5'- -aGgcCGugGGCcugggUCCGCCGCCGa -3'
miRNA:   3'- caCaaGCugUCGcuaa-AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 187989 0.69 0.958078
Target:  5'- -aGUcgUCGAUgcuGuCGAUcUCCACCGCCGu -3'
miRNA:   3'- caCA--AGCUGu--C-GCUAaAGGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.