miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 3634 0.69 0.968085
Target:  5'- uUGUUCucUAGCGugccacggCCGCCGCCGu -3'
miRNA:   3'- cACAAGcuGUCGCuaaa----GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 5535 0.66 0.994501
Target:  5'- gGUGa-CGGCAGcCGGcgcggCCGCCGCCa -3'
miRNA:   3'- -CACaaGCUGUC-GCUaaa--GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 12234 0.69 0.961626
Target:  5'- -gGUUCGACGGCaGAccucacUCuCGCUGCCGa -3'
miRNA:   3'- caCAAGCUGUCG-CUaa----AG-GUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 14455 0.66 0.991698
Target:  5'- ----gCGGCGGCGucagCCGCCGCUc -3'
miRNA:   3'- cacaaGCUGUCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 14672 0.66 0.995243
Target:  5'- cUGaaCGACGcCGAgugCCGCCGCUGg -3'
miRNA:   3'- cACaaGCUGUcGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 16590 0.73 0.847598
Target:  5'- aUGUUCGACAGCGGUguggACCGCg- -3'
miRNA:   3'- cACAAGCUGUCGCUAaaggUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 16793 0.69 0.958078
Target:  5'- -gGggCGACGGCGcccgCCccgACCGCCGg -3'
miRNA:   3'- caCaaGCUGUCGCuaaaGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 21033 0.69 0.958078
Target:  5'- ----aCGccACGGCGAgaUCCACCGCUGu -3'
miRNA:   3'- cacaaGC--UGUCGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 21957 0.66 0.994501
Target:  5'- aGUGggCGagcGCGGCGGgacucguucggUUUCGCCGCUGa -3'
miRNA:   3'- -CACaaGC---UGUCGCUa----------AAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 35473 0.66 0.992736
Target:  5'- ---gUCGugcACGGCGcagcugCCGCCGCCGa -3'
miRNA:   3'- cacaAGC---UGUCGCuaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 36979 0.66 0.991698
Target:  5'- gGUGcUCGGCGGCGAcaUCCGCgacgagggCGUCGc -3'
miRNA:   3'- -CACaAGCUGUCGCUaaAGGUG--------GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 38026 0.67 0.989271
Target:  5'- uUGUUCGACGGCGG-UUCgACgGUa- -3'
miRNA:   3'- cACAAGCUGUCGCUaAAGgUGgCGgc -5'
14638 3' -52.8 NC_003521.1 + 39460 0.7 0.94611
Target:  5'- -gGgaCGGCAGCGGUUcgugUCCcgucGCCGCCu -3'
miRNA:   3'- caCaaGCUGUCGCUAA----AGG----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 43638 0.7 0.950324
Target:  5'- -aGga-GGCGGCGg---CCGCCGCCGg -3'
miRNA:   3'- caCaagCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 43814 0.67 0.990546
Target:  5'- aUG-UCGcaGCAGcCGGgucagCCGCCGCCGg -3'
miRNA:   3'- cACaAGC--UGUC-GCUaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 44404 0.71 0.910134
Target:  5'- -cGggCGACAGCGAcugUCUguGCCGCUGc -3'
miRNA:   3'- caCaaGCUGUCGCUaa-AGG--UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 52922 0.66 0.993667
Target:  5'- -cGUcaUCGACucGCGAUUgUCCACCcaGCUGa -3'
miRNA:   3'- caCA--AGCUGu-CGCUAA-AGGUGG--CGGC- -5'
14638 3' -52.8 NC_003521.1 + 53883 0.69 0.954312
Target:  5'- cUGcUCGAguGCGuucgCCGCCGCCc -3'
miRNA:   3'- cACaAGCUguCGCuaaaGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 55195 0.67 0.987867
Target:  5'- ----aCGAcCGGCGAUggcagUCCGCCGCg- -3'
miRNA:   3'- cacaaGCU-GUCGCUAa----AGGUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 55752 0.67 0.990546
Target:  5'- -cGggCGGCAGCGAcaggCGCgGCCGg -3'
miRNA:   3'- caCaaGCUGUCGCUaaagGUGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.