Results 1 - 20 of 285 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14638 | 5' | -60.3 | NC_003521.1 | + | 235279 | 1.08 | 0.002336 |
Target: 5'- aACCGGGAGGAACGACGCGCCGCCAACu -3' miRNA: 3'- -UGGCCCUCCUUGCUGCGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 22159 | 0.87 | 0.059775 |
Target: 5'- uACCGGGAgacgguggagaGGGACGAgGCGCCGCCGGCc -3' miRNA: 3'- -UGGCCCU-----------CCUUGCUgCGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 65367 | 0.82 | 0.142773 |
Target: 5'- uCCGGG-GaGACGGCGCGCCGCCGAUc -3' miRNA: 3'- uGGCCCuCcUUGCUGCGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 91275 | 0.81 | 0.14984 |
Target: 5'- aACCGGGgaagaagaAGGAGCG-CGCGCCGcCCGACu -3' miRNA: 3'- -UGGCCC--------UCCUUGCuGCGCGGC-GGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 30995 | 0.81 | 0.157225 |
Target: 5'- gAUCGGGAuGGGGCGACGaCGgCGCCGGCg -3' miRNA: 3'- -UGGCCCU-CCUUGCUGC-GCgGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 223739 | 0.77 | 0.262309 |
Target: 5'- uCCGGuGgcGGGAACGugGguCGCCGCCAGCg -3' miRNA: 3'- uGGCC-C--UCCUUGCugC--GCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 236142 | 0.76 | 0.326487 |
Target: 5'- -aCGGGGGGGACcGCGCgacGUCGCCGGCg -3' miRNA: 3'- ugGCCCUCCUUGcUGCG---CGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 166235 | 0.76 | 0.319575 |
Target: 5'- cGCCGGccgcGGGACGcCGCGCCGCCGc- -3' miRNA: 3'- -UGGCCcu--CCUUGCuGCGCGGCGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 19103 | 0.76 | 0.312773 |
Target: 5'- gACgGGGAGGGagACGACGCggguggcggGCCGCCggUg -3' miRNA: 3'- -UGgCCCUCCU--UGCUGCG---------CGGCGGuuG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 102350 | 0.75 | 0.347884 |
Target: 5'- -aCGGGcGGcagguggcaGAUGugGCGCCGCCGGCg -3' miRNA: 3'- ugGCCCuCC---------UUGCugCGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 110683 | 0.75 | 0.355236 |
Target: 5'- cGCuCGGuGGcGGcAGCGGCgGCGCCGCCGACg -3' miRNA: 3'- -UG-GCC-CU-CC-UUGCUG-CGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 132998 | 0.75 | 0.347884 |
Target: 5'- gACCGGGGuuGGGACGGgGacaGCCGCCAccgGCa -3' miRNA: 3'- -UGGCCCU--CCUUGCUgCg--CGGCGGU---UG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 65629 | 0.75 | 0.347884 |
Target: 5'- cCCGcGAGGAGCuGACGCGC-GCCAGCc -3' miRNA: 3'- uGGCcCUCCUUG-CUGCGCGgCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 166647 | 0.74 | 0.385722 |
Target: 5'- cGCCGGGcGccGCGGCGCaGCgGCCAGCg -3' miRNA: 3'- -UGGCCCuCcuUGCUGCG-CGgCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 30903 | 0.74 | 0.385722 |
Target: 5'- uACCuGGGGGAACGAacguaGCGCCaGCCAc- -3' miRNA: 3'- -UGGcCCUCCUUGCUg----CGCGG-CGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 171191 | 0.74 | 0.417887 |
Target: 5'- uGCCGGGAacaAAUGACguGCGCCGCUGACg -3' miRNA: 3'- -UGGCCCUcc-UUGCUG--CGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 166789 | 0.74 | 0.4016 |
Target: 5'- gGCgGGGucGGACGAUGcCGCCGCCGcuGCu -3' miRNA: 3'- -UGgCCCucCUUGCUGC-GCGGCGGU--UG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 136715 | 0.74 | 0.4016 |
Target: 5'- cGCCGccGAGGAugGcaGCGCGCCGCCuuccGCg -3' miRNA: 3'- -UGGCc-CUCCUugC--UGCGCGGCGGu---UG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 113699 | 0.74 | 0.393609 |
Target: 5'- cGCCuGGAGGugcACGACGCGCUGCUc-- -3' miRNA: 3'- -UGGcCCUCCu--UGCUGCGCGGCGGuug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 75975 | 0.74 | 0.385722 |
Target: 5'- cCCGacGAGGAGCGGCccucgccggGCGCCGUCAGCa -3' miRNA: 3'- uGGCc-CUCCUUGCUG---------CGCGGCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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